Variant report

Variant	rs1126301
Chromosome Location	chr3:69597700-69597701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1125745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982992	1.00[ASN][1000 genomes]
rs6549237	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs995829	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69592400-69604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69592400-69607600	Weak transcription	Right Ventricle	heart
3	chr3:69592600-69600000	Weak transcription	Fetal Heart	heart
4	chr3:69595400-69600200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:69596600-69597800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:69596800-69598200	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:69597000-69597800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:69597000-69598000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:69597400-69597800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:69597600-69598400	Enhancers	Brain Hippocampus Middle	brain
11	chr3:69597600-69598400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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