Variant report

Variant	rs112647562
Chromosome Location	chr10:119000955-119000956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118999700..119002680-chr17:41380895..41383406,2	K562	blood:

Variant related genes	Relation type
ENSG00000236383	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3436378	chr10:118999787-119002535	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118999600-119001800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:118999600-119002000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:118999800-119001400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr10:118999800-119001400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:118999800-119001400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:118999800-119001600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr10:118999800-119001600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr10:118999800-119001600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:119000000-119001000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:119000000-119001000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:119000000-119001600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:119000000-119001800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr10:119000200-119001000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
14	chr10:119000200-119001000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
15	chr10:119000200-119001200	Bivalent Enhancer	Adipose Nuclei	Adipose
16	chr10:119000200-119001200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr10:119000200-119001400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:119000200-119001400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:119000200-119001400	Bivalent/Poised TSS	Right Ventricle	heart
20	chr10:119000200-119001400	Bivalent/Poised TSS	HepG2	liver
21	chr10:119000200-119001600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
22	chr10:119000200-119001600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:119000200-119001600	Bivalent Enhancer	Spleen	Spleen
24	chr10:119000200-119001800	Active TSS	Ovary	ovary
25	chr10:119000200-119002200	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:119000200-119002200	Bivalent/Poised TSS	Thymus	Thymus
27	chr10:119000400-119001000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:119000400-119001000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
29	chr10:119000400-119001200	Bivalent/Poised TSS	Fetal Brain Female	brain
30	chr10:119000400-119001400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
31	chr10:119000400-119001400	Bivalent Enhancer	Lung	lung
32	chr10:119000400-119001400	Bivalent/Poised TSS	Psoas Muscle	Psoas
33	chr10:119000400-119001400	Active TSS	Right Atrium	heart
34	chr10:119000400-119001600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:119000400-119001600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:119000400-119001600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:119000400-119001600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr10:119000400-119001600	Enhancers	Liver	Liver
39	chr10:119000400-119001800	Bivalent/Poised TSS	Fetal Thymus	thymus
40	chr10:119000400-119002000	Active TSS	Primary T cells from cord blood	blood
41	chr10:119000600-119001000	Bivalent Enhancer	HMEC	breast
42	chr10:119000600-119001200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
43	chr10:119000600-119001200	Active TSS	A549	lung
44	chr10:119000600-119001400	Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr10:119000600-119001400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:119000600-119001400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:119000600-119001400	Active TSS	Brain Angular Gyrus	brain
48	chr10:119000600-119001400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
49	chr10:119000600-119001600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:119000800-119001000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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