Variant report

Variant	rs11265503
Chromosome Location	chr1:160837531-160837532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2274906	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656947	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6669353	0.84[AMR][1000 genomes]
rs6700961	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
2	chr1:160833600-160840000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:160834000-160837600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:160834600-160837600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:160834600-160838400	Enhancers	Fetal Intestine Small	intestine
6	chr1:160834600-160849000	Weak transcription	Ovary	ovary
7	chr1:160835000-160838400	Enhancers	Fetal Intestine Large	intestine
8	chr1:160835400-160837600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:160835400-160846400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:160836200-160844600	Weak transcription	A549	lung
11	chr1:160836400-160844600	Weak transcription	Pancreas	Pancrea
12	chr1:160836800-160838000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:160836800-160839600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:160836800-160840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:160837400-160837800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:160837400-160840400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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