Variant report

Variant	rs11265551
Chromosome Location	chr1:161064746-161064747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161064725..161068388-chr1:161069127..161071844,3	MCF-7	breast:
2	chr1:161059617..161061388-chr1:161063032..161065856,2	K562	blood:
3	chr1:161014309..161017739-chr1:161064390..161068099,3	K562	blood:
4	chr1:160672794..160675348-chr1:161062304..161065279,2	K562	blood:
5	chr1:161005808..161012985-chr1:161064732..161070101,9	MCF-7	breast:
6	chr1:161063446..161066322-chr1:161070095..161071635,2	MCF-7	breast:
7	chr1:160988378..160992160-chr1:161060181..161066299,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158773	Chromatin interaction
ENSG00000162755	Chromatin interaction
ENSG00000215845	Chromatin interaction
ENSG00000270149	Chromatin interaction
ENSG00000158769	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11577230	0.81[EUR][1000 genomes]
rs11590097	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41270009	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11265551	TSTD1	cis	Nerve Tibial	GTEx
rs11265551	TSTD1	cis	Artery Tibial	GTEx
rs11265551	F11R	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161039600-161066800	Weak transcription	Right Atrium	heart
2	chr1:161060200-161065200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:161061200-161067000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:161061400-161066800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:161062600-161067800	Weak transcription	Lung	lung
6	chr1:161062800-161065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:161062800-161066200	Weak transcription	HSMMtube	muscle
8	chr1:161062800-161066400	Weak transcription	Hela-S3	cervix
9	chr1:161062800-161066800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:161062800-161067600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:161063000-161067200	Weak transcription	A549	lung
12	chr1:161063200-161066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:161063200-161066000	Weak transcription	HSMM	muscle
14	chr1:161063200-161066200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:161063200-161066200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:161063200-161066400	Weak transcription	NHLF	lung
17	chr1:161063200-161066800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:161063200-161067000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:161063200-161067200	Weak transcription	NH-A	brain
20	chr1:161063400-161065800	Weak transcription	Esophagus	oesophagus
21	chr1:161063400-161066000	Weak transcription	HMEC	breast
22	chr1:161063400-161066200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:161063400-161066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:161063400-161066600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:161063400-161067200	Weak transcription	Osteobl	bone
26	chr1:161063600-161064800	Weak transcription	GM12878-XiMat	blood
27	chr1:161063600-161065800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:161063600-161066000	Weak transcription	NHEK	skin
29	chr1:161063600-161066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:161063800-161064800	Weak transcription	Placenta	Placenta
31	chr1:161064000-161065800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:161064600-161065000	Enhancers	Fetal Lung	lung

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