Variant report

Variant	rs11265609
Chromosome Location	chr1:154364328-154364329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1073907	0.83[AMR][1000 genomes]
rs10908834	0.83[EUR][1000 genomes]
rs10908835	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11265593	0.81[AMR][1000 genomes]
rs11265606	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11265607	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11576181	0.81[AMR][1000 genomes]
rs11576193	0.81[AMR][1000 genomes]
rs11577266	0.83[AMR][1000 genomes]
rs11580178	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11582424	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11585004	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12127600	0.81[ASN][1000 genomes]
rs12719998	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12738097	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1889314	0.84[EUR][1000 genomes]
rs1889315	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34437053	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56211693	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61803410	0.81[AMR][1000 genomes]
rs6427627	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6427631	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6657938	0.81[AMR][1000 genomes]
rs6659828	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6661909	0.83[EUR][1000 genomes]
rs6696089	0.81[AMR][1000 genomes]
rs6698130	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7525436	0.83[EUR][1000 genomes]
rs952146	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9651054	0.86[ASN][1000 genomes]
rs9662562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9724691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9728585	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154360400-154370000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:154363200-154364400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:154363400-154364600	Enhancers	NHEK	skin
4	chr1:154363600-154364400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:154363600-154364400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:154363600-154364400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:154363600-154364400	Enhancers	Esophagus	oesophagus
8	chr1:154363600-154364400	Enhancers	HMEC	breast
9	chr1:154363800-154364400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:154364000-154364400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:154364000-154364400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:154364000-154364400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr1:154364200-154364400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:154364200-154364600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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