The 2.0 version of rSNPBase

Variant report

Variant rs11265622
Chromosome Location chr1:154451420-154451421
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154427800-154464800 Weak transcription Ovary ovary
2 chr1:154438400-154457800 Weak transcription Pancreas Pancrea
3 chr1:154438400-154458400 Weak transcription Gastric stomach
4 chr1:154438400-154463400 Weak transcription Esophagus oesophagus
5 chr1:154438800-154454000 Weak transcription Psoas Muscle Psoas
6 chr1:154439400-154457600 Weak transcription Placenta Placenta
7 chr1:154440000-154452800 Weak transcription Primary hematopoietic stem cells blood
8 chr1:154440000-154458200 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:154441600-154465200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:154442400-154455200 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr1:154442400-154455800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:154442800-154452200 Weak transcription Brain Anterior Caudate brain
13 chr1:154442800-154452600 Weak transcription Stomach Smooth Muscle stomach
14 chr1:154442800-154455600 Weak transcription Left Ventricle heart
15 chr1:154442800-154456400 Weak transcription Spleen Spleen
16 chr1:154443000-154452000 Weak transcription Adipose Nuclei Adipose
17 chr1:154443000-154452400 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:154443000-154456400 Weak transcription Right Ventricle heart
19 chr1:154443000-154464400 Weak transcription Colon Smooth Muscle Colon
20 chr1:154447000-154452200 Weak transcription Primary B cells from peripheral blood blood
21 chr1:154447600-154452000 Weak transcription Muscle Satellite Cultured Cells --
22 chr1:154447600-154452200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr1:154447600-154452200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:154447600-154452200 Weak transcription NHDF-Ad bronchial
25 chr1:154447600-154455800 Weak transcription Lung lung
26 chr1:154447800-154458400 Weak transcription Brain Angular Gyrus brain
27 chr1:154448400-154452400 Weak transcription Brain Hippocampus Middle brain
28 chr1:154448400-154452600 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr1:154448600-154458200 Weak transcription Brain Substantia Nigra brain
30 chr1:154448800-154452200 Weak transcription Brain Cingulate Gyrus brain
31 chr1:154449600-154451600 Enhancers Fetal Adrenal Gland Adrenal Gland
32 chr1:154449800-154452200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:154449800-154456400 Weak transcription Hela-S3 cervix
34 chr1:154450000-154454000 Enhancers Primary hematopoietic stem cells short term culture blood
35 chr1:154450000-154457000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:154450000-154462400 Weak transcription Colonic Mucosa Colon
37 chr1:154450200-154456600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:154450400-154452400 Enhancers Primary neutrophils fromperipheralblood blood
39 chr1:154450400-154452400 Enhancers Primary T helper cells PMA-I stimulated --
40 chr1:154450400-154452400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:154450400-154453000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:154450600-154451600 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr1:154450600-154451600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr1:154450600-154451800 Enhancers HepG2 liver
45 chr1:154450600-154451800 Strong transcription HUVEC blood vessel
46 chr1:154450600-154452400 Enhancers Primary T helper cells fromperipheralblood blood
47 chr1:154450600-154452400 Enhancers GM12878-XiMat blood
48 chr1:154450600-154452600 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr1:154450600-154452600 Enhancers Fetal Thymus thymus
50 chr1:154450600-154452800 Enhancers Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015