Variant report

Variant	rs112670498
Chromosome Location	chr11:45898741-45898742
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45897697..45900039-chr11:45919922..45922515,2	K562	blood:
2	chr11:45896832..45899400-chr11:46142147..46144155,2	MCF-7	breast:
3	chr11:45898419..45900060-chr11:45909880..45912583,2	K562	blood:
4	chr11:45896752..45899624-chr11:45938849..45941490,2	K562	blood:
5	chr11:45897245..45899043-chr11:45901363..45903284,2	MCF-7	breast:
6	chr11:45898608..45900937-chr11:45921279..45922958,2	MCF-7	breast:
7	chr11:45897615..45899833-chr11:45916482..45918925,2	K562	blood:
8	chr11:45883450..45885208-chr11:45897811..45899521,2	K562	blood:
9	chr11:45897449..45899197-chr11:45919922..45922462,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121680	Chromatin interaction
ENSG00000121653	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45874200-45904200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:45875200-45905600	Strong transcription	Primary T cells from cord blood	blood
3	chr11:45875800-45904200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr11:45876400-45904200	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:45876800-45900200	Strong transcription	Primary B cells from cord blood	blood
6	chr11:45876800-45903600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr11:45876800-45904600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:45877400-45899800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:45877400-45900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:45877400-45903800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:45877400-45904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:45879200-45901200	Weak transcription	A549	lung
13	chr11:45880000-45903400	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr11:45880200-45904600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:45880400-45904200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:45880600-45904600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:45881200-45905200	Strong transcription	Fetal Intestine Large	intestine
18	chr11:45881800-45900200	Strong transcription	Brain Germinal Matrix	brain
19	chr11:45881800-45900400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:45882000-45900000	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:45882000-45900200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr11:45882000-45902000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:45882000-45904800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:45882200-45900000	Strong transcription	Ovary	ovary
25	chr11:45882200-45900200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:45882200-45900400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:45882400-45900200	Strong transcription	Spleen	Spleen
28	chr11:45882600-45900000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:45882600-45900000	Strong transcription	Right Ventricle	heart
30	chr11:45882600-45902000	Strong transcription	Fetal Stomach	stomach
31	chr11:45882600-45902600	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:45882600-45902800	Weak transcription	Right Atrium	heart
33	chr11:45882600-45905200	Strong transcription	Liver	Liver
34	chr11:45882800-45902600	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:45883000-45901600	Strong transcription	Colon Smooth Muscle	Colon
36	chr11:45883400-45902400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:45883800-45901400	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:45883800-45901600	Strong transcription	Rectal Smooth Muscle	rectum
39	chr11:45883800-45905000	Strong transcription	Placenta	Placenta
40	chr11:45885800-45902200	Strong transcription	Adipose Nuclei	Adipose
41	chr11:45885800-45906400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:45886800-45900000	Strong transcription	Brain Substantia Nigra	brain
43	chr11:45886800-45904000	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr11:45887800-45899800	Strong transcription	Lung	lung
45	chr11:45888800-45899600	Strong transcription	Aorta	Aorta
46	chr11:45893000-45906800	Weak transcription	HSMM	muscle
47	chr11:45893200-45902200	Weak transcription	Psoas Muscle	Psoas
48	chr11:45893200-45906600	Weak transcription	Small Intestine	intestine
49	chr11:45893400-45902600	Weak transcription	Stomach Mucosa	stomach
50	chr11:45893600-45899200	Weak transcription	Fetal Kidney	kidney

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