Variant report

Variant	rs112716957
Chromosome Location	chr17:16926486-16926487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16920777..16926602-chr17:16943525..16948995,8	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MPRIP-1	chr17:16926378-16926772	NONHSAT146035

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16918800-16930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:16922400-16928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:16922800-16928800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr17:16923600-16926800	Enhancers	Brain Anterior Caudate	brain
5	chr17:16923800-16928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:16923800-16929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:16923800-16929000	Weak transcription	NHEK	skin
8	chr17:16924000-16926600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr17:16924200-16926600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr17:16924200-16926600	Enhancers	Brain Angular Gyrus	brain
11	chr17:16924200-16926800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:16924200-16926800	Enhancers	Brain Cingulate Gyrus	brain
13	chr17:16924200-16926800	Enhancers	Brain Hippocampus Middle	brain
14	chr17:16924200-16926800	Enhancers	Brain Substantia Nigra	brain
15	chr17:16924200-16929000	Weak transcription	Lung	lung
16	chr17:16924400-16926600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:16924800-16926600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr17:16924800-16927400	Enhancers	Fetal Intestine Large	intestine
19	chr17:16925000-16930800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:16925200-16930600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr17:16925200-16931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr17:16925400-16928000	Weak transcription	Adipose Nuclei	Adipose
23	chr17:16925400-16928400	Weak transcription	Fetal Lung	lung
24	chr17:16925400-16929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:16925400-16930800	Weak transcription	NH-A	brain
26	chr17:16925400-16931000	Enhancers	A549	lung
27	chr17:16925600-16928200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr17:16925600-16930800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr17:16925600-16930800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr17:16925600-16931800	Weak transcription	Osteobl	bone
31	chr17:16925800-16926600	Enhancers	HSMMtube	muscle
32	chr17:16925800-16929400	Enhancers	Fetal Intestine Small	intestine
33	chr17:16925800-16930600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr17:16925800-16930800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:16926000-16927400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:16926000-16927800	Weak transcription	Fetal Heart	heart
37	chr17:16926000-16928000	Weak transcription	Fetal Stomach	stomach
38	chr17:16926000-16928000	Weak transcription	Right Ventricle	heart
39	chr17:16926000-16928200	Weak transcription	Right Atrium	heart
40	chr17:16926000-16928600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:16926000-16928600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr17:16926000-16930600	Weak transcription	Esophagus	oesophagus
43	chr17:16926000-16930600	Weak transcription	HMEC	breast
44	chr17:16926000-16930800	Weak transcription	Colonic Mucosa	Colon
45	chr17:16926000-16930800	Weak transcription	Spleen	Spleen
46	chr17:16926000-16931400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:16926200-16927400	Enhancers	Hela-S3	cervix
48	chr17:16926200-16928000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr17:16926200-16928000	Weak transcription	Fetal Muscle Leg	muscle
50	chr17:16926200-16928000	Weak transcription	Pancreas	Pancrea

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