Variant report

Variant	rs112735243
Chromosome Location	chr4:91602654-91602655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr4:91602296-91602678	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000251401	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879545	chr4:91546380-91603567	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879546	chr4:91546380-91606389	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879549	chr4:91568530-91603567	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879550	chr4:91568530-91606389	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879551	chr4:91568530-91615595	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv594832	chr4:91575741-91606389	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv4419	chr4:91582393-91612970	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2431994	chr4:91596023-91604077	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv435805	chr4:91596056-91604260	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv2631037	chr4:91596201-91603528	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3465703	chr4:91596376-91603230	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3506354	chr4:91596429-91603602	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv8056	chr4:91596562-91603155	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv991351	chr4:91596605-91603452	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3465702	chr4:91596663-91603008	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3506353	chr4:91596671-91603018	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv3506356	chr4:91596675-91603414	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	esv3506359	chr4:91596681-91602945	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
23	esv3508826	chr4:91596681-91603018	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3508825	chr4:91596681-91603123	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv3506358	chr4:91596690-91602992	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv3465704	chr4:91596691-91602978	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv3506357	chr4:91596715-91602955	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv3465701	chr4:91596725-91602936	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
29	nsv461581	chr4:91596734-91647046	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv594833	chr4:91596734-91647046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	esv3506360	chr4:91596737-91602968	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
32	nsv513148	chr4:91596740-91603839	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
33	esv3365098	chr4:91596757-91602938	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
34	esv3372863	chr4:91596770-91602916	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
35	esv3475	chr4:91596774-91602979	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
36	esv3506355	chr4:91596777-91602931	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
37	nsv499052	chr4:91596785-91602922	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
38	nsv499053	chr4:91596785-91602922	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
39	esv3465705	chr4:91596786-91602922	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
40	esv3506361	chr4:91596786-91602922	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
41	esv1005904	chr4:91596795-91602917	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
42	esv1218510	chr4:91596798-91602921	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
43	nsv508298	chr4:91598023-91604884	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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