Variant report

Variant	rs1127574
Chromosome Location	chr6:27327988-27327989
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27177161..27179137-chr6:27326485..27328754,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POM121L2-2	chr6:27325602-27328000	NONHSAT108367
2	lnc-POM121L2-2	chr6:27325602-27328000	NONHSAT108368
3	lnc-POM121L2-2	chr6:27325604-27328000	NONHSAT108369
4	lnc-POM121L2-2	chr6:27325607-27328000	NONHSAT108370
5	lnc-POM121L2-2	chr6:27325619-27328000	NONHSAT108373
6	lnc-POM121L2-2	chr6:27325656-27328000	NONHSAT108374

No data

Variant related genes	Relation type
ENSG00000174572	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12199213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555040	0.98[ASN][1000 genomes]
rs17688516	0.98[ASN][1000 genomes]
rs17739702	0.98[ASN][1000 genomes]
rs17739727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923531	0.88[ASN][1000 genomes]
rs56388125	0.81[ASN][1000 genomes]
rs62622793	0.96[ASN][1000 genomes]
rs721600	0.82[EUR][1000 genomes]
rs72839482	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs764285	0.83[ASN][1000 genomes]
rs9348760	0.84[EUR][1000 genomes]
rs9348761	0.84[EUR][1000 genomes]
rs9348762	0.84[EUR][1000 genomes]
rs9368502	0.82[EUR][1000 genomes]
rs9379978	0.82[EUR][1000 genomes]
rs9393808	0.82[EUR][1000 genomes]
rs9461359	0.82[EUR][1000 genomes]
rs9461360	0.82[EUR][1000 genomes]
rs9461362	0.81[ASN][1000 genomes]
rs9461363	0.86[ASN][1000 genomes]
rs9461366	0.83[ASN][1000 genomes]
rs9468069	0.82[EUR][1000 genomes]
rs9468076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27316800-27335400	Weak transcription	Pancreas	Pancrea
2	chr6:27325600-27328200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr6:27325800-27336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:27326000-27328000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr6:27326000-27331200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr6:27326000-27335600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:27326200-27328200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr6:27326200-27328200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr6:27326200-27331000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:27326400-27328200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr6:27326400-27328200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr6:27326400-27328400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
13	chr6:27326400-27329600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:27326400-27331800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:27326600-27328000	ZNF genes & repeats	Ovary	ovary
16	chr6:27326600-27328200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr6:27326600-27328200	ZNF genes & repeats	Right Ventricle	heart
18	chr6:27326600-27328800	ZNF genes & repeats	Fetal Lung	lung
19	chr6:27326600-27329400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr6:27326800-27328200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr6:27326800-27328200	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr6:27326800-27328400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:27326800-27330800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr6:27326800-27331200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:27326800-27342000	Weak transcription	Colonic Mucosa	Colon
26	chr6:27327000-27328600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:27327000-27329200	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:27327000-27332000	Weak transcription	Stomach Mucosa	stomach
29	chr6:27327000-27342000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:27327200-27328200	ZNF genes & repeats	Colon Smooth Muscle	Colon
31	chr6:27327200-27328200	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr6:27327400-27329600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr6:27327400-27330200	Weak transcription	Brain Anterior Caudate	brain
34	chr6:27327400-27333400	Weak transcription	Aorta	Aorta
35	chr6:27327400-27335600	Weak transcription	Gastric	stomach
36	chr6:27327400-27335800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:27327400-27336600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:27327400-27341800	Weak transcription	Fetal Brain Male	brain
39	chr6:27327400-27341800	Weak transcription	Fetal Kidney	kidney
40	chr6:27327600-27328800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:27327600-27329800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:27327600-27335800	Weak transcription	Brain Angular Gyrus	brain
43	chr6:27327600-27342200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:27327800-27328000	Strong transcription	Left Ventricle	heart
45	chr6:27327800-27328000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr6:27327800-27328000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
47	chr6:27327800-27329800	Strong transcription	Brain Inferior Temporal Lobe	brain

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