Variant report

Variant	rs112775968
Chromosome Location	chr3:56649919-56649920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:56649770-56650050	K562	blood:	n/a	n/a
2	POLR2A	chr3:56648967-56664047	K562	blood:	n/a	n/a

Variant related genes	Relation type
CCDC66	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460557	chr3:56594735-56661320	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv590362	chr3:56594735-56661320	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv820061	chr3:56648862-56650174	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56603200-56650400	Weak transcription	K562	blood
2	chr3:56606200-56650200	Weak transcription	Colonic Mucosa	Colon
3	chr3:56607800-56650200	Weak transcription	Psoas Muscle	Psoas
4	chr3:56625200-56650400	Weak transcription	NHEK	skin
5	chr3:56625200-56653400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:56626400-56656200	Weak transcription	Stomach Mucosa	stomach
7	chr3:56630000-56654400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:56634000-56651400	Weak transcription	Fetal Brain Male	brain
9	chr3:56640000-56650000	Weak transcription	HMEC	breast
10	chr3:56640400-56650800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:56640600-56650400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:56640600-56652600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:56640800-56650400	Weak transcription	NHLF	lung
14	chr3:56640800-56650600	Weak transcription	HSMMtube	muscle
15	chr3:56640800-56650800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:56640800-56664200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:56644200-56664000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:56644400-56652000	Strong transcription	Fetal Lung	lung
21	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:56644600-56655800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:56644600-56665600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:56644600-56668600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:56644800-56655400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:56644800-56656000	Strong transcription	Fetal Muscle Leg	muscle
27	chr3:56644800-56669800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:56645000-56650600	Weak transcription	A549	lung
30	chr3:56645000-56650800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:56645200-56651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:56645200-56657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:56645400-56653800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:56645400-56667200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr3:56645600-56650600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:56645600-56653400	Weak transcription	Fetal Heart	heart
38	chr3:56645600-56656000	Strong transcription	Fetal Intestine Large	intestine
39	chr3:56645600-56656000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr3:56645600-56664800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:56645600-56665800	Strong transcription	Hela-S3	cervix
42	chr3:56645800-56662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr3:56645800-56663800	Strong transcription	HSMM	muscle
44	chr3:56646000-56662800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:56646200-56659200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:56646600-56650600	Weak transcription	Left Ventricle	heart
47	chr3:56646600-56669000	Weak transcription	Small Intestine	intestine
48	chr3:56646800-56650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:56646800-56658800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:56646800-56659200	Weak transcription	Fetal Intestine Small	intestine

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