Variant report

Variant	rs11279405
Chromosome Location	chr18:8985198-8985199
allele	-/TGATTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3317280	chr18:8984505-8985569	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3317281	chr18:8984505-8985569	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2648540	chr18:8985198-8985203	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv124588	chr18:8985198-8985203	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv2374584	chr18:8985198-8985204	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8981200-8987000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:8981400-8988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr18:8983000-8987000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr18:8983200-8986400	Weak transcription	Pancreas	Pancrea
5	chr18:8983200-8986800	Weak transcription	A549	lung
6	chr18:8983200-8987000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:8983200-8987000	Weak transcription	HSMM	muscle
8	chr18:8983200-8987000	Weak transcription	NH-A	brain
9	chr18:8983200-8988000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:8983200-8988800	Enhancers	Colon Smooth Muscle	Colon
11	chr18:8983400-8986800	Weak transcription	Osteobl	bone
12	chr18:8983400-8987000	Weak transcription	HSMMtube	muscle
13	chr18:8983400-8987200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr18:8983400-8987800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr18:8983600-8985800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:8983600-8987000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr18:8983600-8987200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr18:8983600-8987400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr18:8983800-8987400	Weak transcription	Fetal Stomach	stomach
20	chr18:8984200-8986200	Weak transcription	K562	blood
21	chr18:8984200-8987200	Weak transcription	Fetal Thymus	thymus
22	chr18:8984400-8986800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr18:8984600-8986000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr18:8984600-8986800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr18:8984600-8986800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr18:8984600-8986800	Weak transcription	HMEC	breast
27	chr18:8984600-8986800	Weak transcription	NHDF-Ad	bronchial
28	chr18:8984600-8986800	Weak transcription	NHEK	skin
29	chr18:8984800-8986800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links