The 2.0 version of rSNPBase
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Variant report
Variant
rs112796730
Chromosome Location
chrY:20487829-20487830
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:5)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
POLR2A
chrY:20487451-20488572
A549
lung:
n/a
n/a
2
POLR2A
chrY:20487742-20488506
A549
lung:
n/a
n/a
3
POLR2A
chrY:20487502-20488583
A549
lung:
n/a
n/a
4
POLR2A
chrY:20487434-20488627
A549
lung:
n/a
n/a
5
POLR2A
chrY:20487469-20488595
A549
lung:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
FAM224A
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv869477
chrY:20063342-20961810
Enhancers Weak transcription Active TSS ZNF genes & repeats
TF binding regionCpG islandlncRNA
46 gene(s)
inside rSNPs
diseases
2
esv3430705
chrY:20340842-20694293
Inactive region
TF binding regionCpG islandlncRNA
18 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links