Variant report

Variant	rs1128150
Chromosome Location	chr9:115927857-115927858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:115912109..115914573-chr9:115927637..115929668,2	MCF-7	breast:
2	chr9:115917061..115918640-chr9:115927400..115929607,2	MCF-7	breast:
3	chr9:115884874..115886487-chr9:115927190..115929312,2	K562	blood:
4	chr9:115900227..115901850-chr9:115926488..115929015,2	MCF-7	breast:
5	chr2:38145180..38147484-chr9:115926725..115928562,2	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FKBP15	hsa-miR-192-5p	chr9:115927845-115927865

Variant related genes	Relation type
ENSG00000136867	Chromatin interaction
FKBP15	miRNA target site

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10759626	0.90[EUR][1000 genomes]
rs10817446	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs10817449	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10817464	0.82[GIH][hapmap]
rs10981648	1.00[CEU][hapmap]
rs10981650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs10981655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981659	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981674	0.92[ASN][1000 genomes]
rs10981681	1.00[ASN][1000 genomes]
rs10981683	1.00[ASN][1000 genomes]
rs1128116	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1128118	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1128122	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12115388	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340409	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350438	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12352536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378957	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17762224	0.82[ASW][hapmap];0.85[LWK][hapmap]
rs3923601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.93[EUR][1000 genomes]
rs3923602	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.93[EUR][1000 genomes]
rs3935394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4273923	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342685	0.84[GIH][hapmap]
rs57247612	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57348436	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756152	0.93[EUR][1000 genomes]
rs7467882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv1051654	chr9:115881588-115935663	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1035406	chr9:115883978-116003980	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540201	chr9:115883978-116003980	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv466507	chr9:115905850-115936903	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv615213	chr9:115905850-115936903	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115915200-115930200	Weak transcription	Stomach Mucosa	stomach
2	chr9:115917800-115949400	Strong transcription	Placenta	Placenta
3	chr9:115918400-115947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:115918600-115930200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:115918800-115937000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:115919000-115929800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:115919000-115935600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:115919000-115936800	Strong transcription	Fetal Brain Female	brain
9	chr9:115919200-115937400	Strong transcription	HMEC	breast
10	chr9:115919200-115950800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:115919400-115936800	Strong transcription	Pancreas	Pancrea
12	chr9:115919400-115937000	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:115919400-115937200	Strong transcription	Fetal Stomach	stomach
14	chr9:115919400-115950800	Strong transcription	Primary T cells from cord blood	blood
15	chr9:115919400-115954200	Strong transcription	Fetal Intestine Large	intestine
16	chr9:115919600-115936800	Strong transcription	Fetal Intestine Small	intestine
17	chr9:115919600-115938000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:115919600-115938800	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:115919600-115940200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:115919800-115937000	Strong transcription	Fetal Muscle Leg	muscle
21	chr9:115919800-115939400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr9:115920000-115939000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr9:115920000-115942400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr9:115920000-115950200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:115920000-115951400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr9:115920000-115970200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:115920000-115973400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr9:115920200-115956600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:115920400-115929600	Genic enhancers	Brain Hippocampus Middle	brain
30	chr9:115920400-115937200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:115920400-115973400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:115920600-115937200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:115920600-115941600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr9:115920800-115966400	Strong transcription	Dnd41	blood
35	chr9:115920800-115975000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:115921000-115937800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:115921200-115930000	Genic enhancers	Brain Substantia Nigra	brain
38	chr9:115921200-115936800	Strong transcription	Thymus	Thymus
39	chr9:115921800-115936800	Strong transcription	Primary B cells from cord blood	blood
40	chr9:115921800-115951000	Strong transcription	Fetal Thymus	thymus
41	chr9:115922400-115942000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:115922600-115929000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr9:115922800-115956400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:115923000-115942200	Strong transcription	GM12878-XiMat	blood
45	chr9:115923000-115956200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:115923200-115937000	Strong transcription	Lung	lung
47	chr9:115923200-115940800	Strong transcription	NHEK	skin
48	chr9:115923400-115934000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:115923400-115934000	Strong transcription	Hela-S3	cervix
50	chr9:115923400-115941800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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