Variant report

Variant	rs112838871
Chromosome Location	chr6:4050181-4050182
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:4048635-4050195	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4019656..4024130-chr6:4049502..4053557,5	K562	blood:
2	chr6:4049071..4052432-chr6:4060927..4063181,3	K562	blood:

Variant related genes	Relation type
PRPF4B	TF binding region
ENSG00000230648	Chromatin interaction
ENSG00000112739	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1034223	chr6:4030708-4060347	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv2527172	chr6:4049501-4051042	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv9631	chr6:4050031-4050824	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2201190	chr6:4050040-4050773	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3472026	chr6:4050131-4050657	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3512393	chr6:4050151-4050669	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3512400	chr6:4050159-4050644	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3512398	chr6:4050169-4050617	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3512392	chr6:4050171-4050597	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3472027	chr6:4050181-4050632	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4023000-4063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:4023200-4064000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:4023400-4071600	Weak transcription	Stomach Mucosa	stomach
4	chr6:4023800-4067000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:4024600-4059200	Strong transcription	Fetal Thymus	thymus
6	chr6:4027200-4058200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:4030600-4065800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:4030800-4059000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:4030800-4066600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:4031000-4059200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:4031000-4066400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:4031200-4066600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:4033400-4055200	Strong transcription	K562	blood
14	chr6:4033800-4054400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:4034000-4066800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:4035600-4063600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:4035600-4064200	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr6:4035800-4051200	Strong transcription	Primary B cells from cord blood	blood
19	chr6:4035800-4052000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr6:4035800-4054400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:4035800-4057400	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:4035800-4058400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:4035800-4058600	Strong transcription	Primary T cells from cord blood	blood
24	chr6:4035800-4064600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr6:4035800-4065000	Strong transcription	Dnd41	blood
26	chr6:4035800-4066000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr6:4035800-4066000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr6:4035800-4066200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:4036000-4058200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:4036000-4066600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:4036000-4066600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:4036400-4055200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:4036600-4055200	Strong transcription	NHEK	skin
34	chr6:4037200-4051000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:4037200-4059400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr6:4037200-4066200	Strong transcription	Liver	Liver
37	chr6:4037400-4054200	Strong transcription	NH-A	brain
38	chr6:4037400-4055600	Strong transcription	Hela-S3	cervix
39	chr6:4037400-4058400	Strong transcription	HepG2	liver
40	chr6:4037400-4059400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:4037400-4065800	Strong transcription	Placenta	Placenta
42	chr6:4037600-4050400	Strong transcription	NHDF-Ad	bronchial
43	chr6:4037600-4053800	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr6:4037600-4055400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:4037600-4066200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr6:4037600-4066400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:4037800-4058600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:4037800-4058600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:4037800-4058800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr6:4037800-4059400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links