The 2.0 version of rSNPBase

Variant report

Variant rs112840590
Chromosome Location chr6:38496536-38496537
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:38452400-38496600 Weak transcription Primary B cells from cord blood blood
2 chr6:38476600-38499800 Weak transcription Pancreas Pancrea
3 chr6:38476800-38498800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr6:38477800-38498400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr6:38479000-38509800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr6:38485400-38500400 Weak transcription Gastric stomach
7 chr6:38487000-38518600 Weak transcription Primary T cells from cord blood blood
8 chr6:38487800-38502600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr6:38489000-38501000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr6:38490200-38499600 Weak transcription Brain Angular Gyrus brain
11 chr6:38490400-38497800 Weak transcription Rectal Smooth Muscle rectum
12 chr6:38490600-38503400 Weak transcription Fetal Lung lung
13 chr6:38492800-38508000 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr6:38493600-38498600 ZNF genes & repeats Fetal Intestine Small intestine
15 chr6:38494200-38497200 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr6:38494200-38499600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr6:38494200-38499800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr6:38494400-38496600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr6:38494400-38497600 Weak transcription Duodenum Mucosa Duodenum
20 chr6:38494400-38499800 Weak transcription Left Ventricle heart
21 chr6:38494400-38499800 Weak transcription Spleen Spleen
22 chr6:38494400-38500200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr6:38494400-38513800 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr6:38494400-38515400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr6:38494400-38518800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr6:38494400-38524200 Weak transcription Aorta Aorta
27 chr6:38494600-38497200 Weak transcription Fetal Muscle Trunk muscle
28 chr6:38494800-38499400 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr6:38494800-38522600 Weak transcription Ovary ovary
30 chr6:38495000-38521800 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr6:38495800-38496600 Strong transcription Fetal Stomach stomach
32 chr6:38495800-38496800 Enhancers Skeletal Muscle Female skeletal muscle
33 chr6:38496000-38496800 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr6:38496000-38496800 Strong transcription Lung lung
35 chr6:38496000-38497000 Strong transcription Primary T helper naive cells fromperipheralblood blood
36 chr6:38496000-38502400 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr6:38496200-38496600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
38 chr6:38496200-38496800 Strong transcription Primary T cells fromperipheralblood blood
39 chr6:38496200-38498800 ZNF genes & repeats Primary B cells from peripheral blood blood
40 chr6:38496200-38517600 Weak transcription Esophagus oesophagus
41 chr6:38496400-38497400 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
42 chr6:38496400-38500000 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015