Variant report

Variant	rs112884086
Chromosome Location	chr7:121950513-121950514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121944178..121945755-chr7:121949719..121951349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230316	Chromatin interaction
ENSG00000128610	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv971144	chr7:121950027-121953468	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121940000-121951000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121946600-121951000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121947400-121951200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:121948800-121950800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:121949400-121952200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
6	chr7:121949800-121951200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:121950000-121950600	Bivalent/Poised TSS	Aorta	Aorta
8	chr7:121950000-121950600	Bivalent/Poised TSS	A549	lung
9	chr7:121950000-121950800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr7:121950000-121951000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:121950000-121951000	Bivalent/Poised TSS	HSMM	muscle
12	chr7:121950000-121951000	Flanking Bivalent TSS/Enh	NH-A	brain
13	chr7:121950000-121951000	Bivalent/Poised TSS	NHDF-Ad	bronchial
14	chr7:121950000-121951000	Bivalent/Poised TSS	Osteobl	bone
15	chr7:121950000-121952200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr7:121950000-121952200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr7:121950000-121952200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr7:121950000-121952400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:121950200-121950600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121950200-121950600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
21	chr7:121950200-121950600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr7:121950200-121950600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:121950200-121950600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
24	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Liver	Liver
25	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
26	chr7:121950200-121950600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
27	chr7:121950200-121950600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
28	chr7:121950200-121950600	Bivalent/Poised TSS	Colonic Mucosa	Colon
29	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
30	chr7:121950200-121950600	Bivalent Enhancer	Fetal Brain Male	brain
31	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
32	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
33	chr7:121950200-121950600	Flanking Bivalent TSS/Enh	Placenta	Placenta
34	chr7:121950200-121950600	Enhancers	Lung	lung
35	chr7:121950200-121950600	Active TSS	Pancreas	Pancrea
36	chr7:121950200-121950600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
37	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:121950200-121950800	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:121950200-121950800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:121950200-121950800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:121950200-121950800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
45	chr7:121950200-121950800	Bivalent/Poised TSS	Fetal Brain Female	brain
46	chr7:121950200-121950800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
47	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
48	chr7:121950200-121950800	Active TSS	Gastric	stomach
49	chr7:121950200-121950800	Flanking Bivalent TSS/Enh	Left Ventricle	heart
50	chr7:121950200-121950800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum

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