Variant report

Variant	rs1129484
Chromosome Location	chr15:74044906-74044907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr15:74044521-74045350	ECC-1	luminal epithelium:	n/a	n/a
2	BACH1	chr15:74044777-74044983	H1-hESC	embryonic stem cell:	n/a	n/a
3	REST	chr15:74044416-74045070	H1-neurons	neurons:	n/a	chr15:74044737-74044750 chr15:74044612-74044625 chr15:74045045-74045065
4	GABPA	chr15:74044827-74045270	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3A	chr15:74044621-74045299	H1-hESC	embryonic stem cell:	n/a	chr15:74044971-74044982
6	MAZ	chr15:74044597-74046256	IMR90	lung:	n/a	chr15:74044619-74044629 chr15:74044615-74044625
7	ZNF263	chr15:74044856-74045150	HEK293-T-REx	kidney:	n/a	n/a
8	ZBTB7A	chr15:74044592-74045458	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
C15orf59	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11638072	0.81[ASN][1000 genomes]
rs12910404	0.86[ASN][1000 genomes]
rs12915175	0.98[ASN][1000 genomes]
rs12917099	0.86[ASN][1000 genomes]
rs1351159	0.81[ASN][1000 genomes]
rs1351161	0.81[ASN][1000 genomes]
rs1542544	0.81[ASN][1000 genomes]
rs2127019	0.82[ASN][1000 genomes]
rs2279154	0.82[ASN][1000 genomes]
rs2279155	0.82[ASN][1000 genomes]
rs28627084	0.81[ASN][1000 genomes]
rs28649098	0.82[ASN][1000 genomes]
rs4886892	0.81[ASN][1000 genomes]
rs4886896	0.81[ASN][1000 genomes]
rs4887036	0.82[ASN][1000 genomes]
rs4887039	0.82[ASN][1000 genomes]
rs4887114	0.87[ASN][1000 genomes]
rs8042653	0.81[ASN][1000 genomes]
rs896599	0.95[ASN][1000 genomes]
rs922457	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv13877	chr15:74044459-74046147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3418540	chr15:74044749-74046697	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74043200-74046000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:74043400-74045000	Enhancers	Spleen	Spleen
3	chr15:74043400-74045400	Active TSS	Brain Substantia Nigra	brain
4	chr15:74043600-74045000	Flanking Active TSS	Right Ventricle	heart
5	chr15:74043600-74045200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:74043600-74045400	Active TSS	Brain Cingulate Gyrus	brain
7	chr15:74043600-74045800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr15:74043600-74046000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr15:74043800-74045000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:74043800-74045200	Active TSS	Fetal Kidney	kidney
11	chr15:74043800-74045400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:74043800-74045800	Active TSS	Right Atrium	heart
13	chr15:74043800-74046000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:74044000-74045400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:74044000-74045400	Active TSS	Brain Angular Gyrus	brain
16	chr15:74044000-74045400	Active TSS	Brain Anterior Caudate	brain
17	chr15:74044000-74045800	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr15:74044000-74045800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:74044000-74045800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:74044000-74045800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
21	chr15:74044000-74046000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr15:74044000-74046000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr15:74044000-74046000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:74044000-74046000	Active TSS	Brain Germinal Matrix	brain
25	chr15:74044000-74046000	Active TSS	Fetal Brain Female	brain
26	chr15:74044200-74045200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr15:74044200-74045800	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr15:74044200-74045800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:74044200-74045800	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr15:74044200-74045800	Weak transcription	Fetal Brain Male	brain
31	chr15:74044200-74045800	Bivalent/Poised TSS	Fetal Stomach	stomach
32	chr15:74044200-74045800	Active TSS	Left Ventricle	heart
33	chr15:74044200-74045800	Active TSS	Rectal Smooth Muscle	rectum
34	chr15:74044200-74046000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr15:74044200-74046000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:74044200-74046000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:74044200-74046000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:74044200-74046000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:74044400-74045000	Enhancers	Primary B cells from peripheral blood	blood
40	chr15:74044400-74045000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr15:74044400-74045000	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr15:74044400-74045000	Enhancers	Liver	Liver
43	chr15:74044400-74045000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr15:74044400-74045000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
45	chr15:74044400-74045000	Flanking Bivalent TSS/Enh	Placenta	Placenta
46	chr15:74044400-74045200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:74044400-74045200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
48	chr15:74044400-74045200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
49	chr15:74044400-74045200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:74044400-74045200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links