Variant report

Variant	rs113034578
Chromosome Location	chr19:44841031-44841032
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44832482..44835383-chr19:44840174..44844169,3	MCF-7	breast:
2	chr19:44840012..44842382-chr19:44842784..44845287,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382907	chr19:44840612-44842610	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr19:44828600-44844200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
7	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
8	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:44828800-44842600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:44829000-44844000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:44829200-44841200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:44830400-44845000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr19:44830600-44841200	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr19:44830600-44845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr19:44830800-44845600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:44831600-44841200	ZNF genes & repeats	Aorta	Aorta
20	chr19:44831600-44841400	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:44831800-44841200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr19:44831800-44845000	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr19:44832000-44845600	Weak transcription	Hela-S3	cervix
26	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr19:44832400-44841200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr19:44834800-44841200	ZNF genes & repeats	A549	lung
29	chr19:44835000-44841200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr19:44836000-44841200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:44837200-44841200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:44837400-44841200	Strong transcription	Right Ventricle	heart
33	chr19:44837400-44841200	ZNF genes & repeats	Small Intestine	intestine
34	chr19:44837400-44841400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:44837400-44841400	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr19:44837400-44841400	ZNF genes & repeats	Pancreas	Pancrea
37	chr19:44837400-44844800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr19:44837400-44845200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
40	chr19:44838000-44841600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr19:44838400-44841200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
42	chr19:44838600-44841200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:44838600-44841200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr19:44838600-44841200	ZNF genes & repeats	Colonic Mucosa	Colon
45	chr19:44838600-44841400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:44838600-44841400	ZNF genes & repeats	Lung	lung
47	chr19:44838800-44841200	Strong transcription	NHLF	lung
48	chr19:44839000-44842000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr19:44839200-44841200	ZNF genes & repeats	Fetal Brain Male	brain
50	chr19:44839400-44841600	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links