Variant report

Variant	rs113052543
Chromosome Location	chr7:109240562-109240563
allele	-/ATTTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1017184	chr7:109240101-109350011	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2638047	chr7:109240562-109240566	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2103815	chr7:109240562-109240567	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109238400-109240600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:109238600-109240600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:109238600-109241400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:109239200-109241400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:109239600-109240800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:109239600-109241200	Enhancers	Dnd41	blood
7	chr7:109240000-109240600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:109240000-109243800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:109240000-109245000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:109240400-109241200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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