Variant report

Variant	rs11310685
Chromosome Location	chr6:48941685-48941686
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603037	chr6:48804862-48995221	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603039	chr6:48928544-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv5293	chr6:48930102-48942492	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv603047	chr6:48931959-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv603048	chr6:48931959-48944544	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv603060	chr6:48932867-48942969	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv603067	chr6:48933070-48942969	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv603074	chr6:48933770-48942969	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv969301	chr6:48940479-48942979	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv1977821	chr6:48941685-48941686	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48832200-48944000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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