Variant report

Variant	rs1131340
Chromosome Location	chr9:102627315-102627316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102579454..102582118-chr9:102626994..102629896,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3383769	chr9:102627202-102627420	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102595400-102628200	Weak transcription	Fetal Brain Female	brain
2	chr9:102610400-102631200	Weak transcription	NHLF	lung
3	chr9:102610400-102644000	Weak transcription	Aorta	Aorta
4	chr9:102611800-102628800	Weak transcription	Right Ventricle	heart
5	chr9:102612800-102628200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:102613400-102628800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:102614400-102627600	Weak transcription	Primary T cells from cord blood	blood
8	chr9:102615000-102627600	Weak transcription	Psoas Muscle	Psoas
9	chr9:102615400-102628600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:102615400-102644000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:102617400-102628200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:102617400-102629000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:102618200-102628800	Weak transcription	Left Ventricle	heart
14	chr9:102622000-102628800	Weak transcription	Ovary	ovary
15	chr9:102622000-102630000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:102622200-102628800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:102622600-102635600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:102625600-102627400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:102625600-102628200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:102625600-102628400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:102625600-102628800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:102625600-102628800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:102625800-102628200	Weak transcription	Brain Germinal Matrix	brain
24	chr9:102626200-102632400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:102626400-102628000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:102627000-102628200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:102627000-102628600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:102627000-102630800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:102627000-102631000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:102627000-102632600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:102627200-102630600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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