Variant report

Variant	rs113170482
Chromosome Location	chr7:65616665-65616666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65613342..65615029-chr7:65615766..65618205,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv971172	chr7:65616238-65653268	Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65581000-65617200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:65595200-65622000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:65595600-65623200	Strong transcription	Dnd41	blood
4	chr7:65595600-65623800	Strong transcription	Primary T cells from cord blood	blood
5	chr7:65595800-65617200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:65595800-65620000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:65599200-65623400	Strong transcription	Primary B cells from peripheral blood	blood
8	chr7:65606600-65617600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:65607400-65617000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:65608200-65617000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:65609000-65622400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:65609200-65623200	Weak transcription	Fetal Brain Male	brain
13	chr7:65609200-65623400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:65609600-65624600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:65610400-65617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:65611200-65617000	Enhancers	NHDF-Ad	bronchial
17	chr7:65612000-65635400	Weak transcription	Fetal Kidney	kidney
18	chr7:65612600-65617000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:65612600-65617000	Weak transcription	Aorta	Aorta
20	chr7:65612800-65617000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:65613600-65621600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:65613800-65617000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:65614000-65617200	Enhancers	HUVEC	blood vessel
24	chr7:65614200-65616800	Enhancers	HepG2	liver
25	chr7:65614200-65620000	Strong transcription	GM12878-XiMat	blood
26	chr7:65614800-65618200	Enhancers	Right Atrium	heart
27	chr7:65615200-65617000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:65615200-65617200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:65615200-65618000	Genic enhancers	Fetal Muscle Leg	muscle
30	chr7:65615200-65618200	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr7:65615200-65618400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:65615200-65618400	Genic enhancers	Fetal Stomach	stomach
33	chr7:65615200-65622600	Strong transcription	Fetal Brain Female	brain
34	chr7:65615200-65623400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr7:65615200-65623800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:65615200-65623800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr7:65615400-65616800	Enhancers	Brain Substantia Nigra	brain
38	chr7:65615400-65617000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:65615400-65617000	Enhancers	Right Ventricle	heart
40	chr7:65615400-65617000	Enhancers	NH-A	brain
41	chr7:65615400-65617800	Genic enhancers	Brain Cingulate Gyrus	brain
42	chr7:65615400-65617800	Genic enhancers	Brain Inferior Temporal Lobe	brain
43	chr7:65615400-65618000	Genic enhancers	Pancreas	Pancrea
44	chr7:65615400-65618000	Genic enhancers	Rectal Mucosa Donor 31	rectum
45	chr7:65615400-65618800	Enhancers	Fetal Heart	heart
46	chr7:65615400-65619000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:65615400-65619400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr7:65615400-65619600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr7:65615400-65623600	Strong transcription	Primary B cells from cord blood	blood
50	chr7:65615400-65623600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links