Variant report

Variant	rs1131941
Chromosome Location	chr14:24760808-24760809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24760149-24760912	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24759839-24762221	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24679583..24682789-chr14:24759113..24762719,3	K562	blood:
2	chr14:24759089..24762221-chr14:24766736..24770177,4	MCF-7	breast:
3	chr14:24663653..24665902-chr14:24759209..24762065,2	MCF-7	breast:
4	chr14:24760425..24763261-chr14:24763604..24766558,4	MCF-7	breast:
5	chr14:24759345..24761161-chr14:24766043..24768971,2	K562	blood:

No data

Variant related genes	Relation type
DHRS1	TF binding region
ENSG00000254692	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000157379	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158632	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158634	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158635	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886362	0.86[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144494	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224122	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281472	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2516564	0.93[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2748543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181384	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280164	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366641	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4374085	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981503	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981504	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1131941	LTB4R	cis	Thyroid	GTEx
rs1131941	LTB4R	cis	lung	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24741200-24768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:24741600-24767800	Weak transcription	Fetal Brain Male	brain
3	chr14:24748000-24764800	Weak transcription	K562	blood
4	chr14:24748600-24768200	Weak transcription	Psoas Muscle	Psoas
5	chr14:24748800-24764800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:24749000-24768200	Weak transcription	Right Atrium	heart
7	chr14:24749400-24763800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:24750800-24765000	Weak transcription	NHDF-Ad	bronchial
9	chr14:24753600-24766000	Weak transcription	Fetal Heart	heart
10	chr14:24753600-24768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:24754200-24761400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:24756200-24765800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:24756400-24764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:24756400-24765800	Strong transcription	Fetal Intestine Small	intestine
15	chr14:24757200-24764800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:24757400-24765000	Weak transcription	Fetal Kidney	kidney
17	chr14:24757600-24766000	Weak transcription	Stomach Mucosa	stomach
18	chr14:24757800-24766200	Strong transcription	Fetal Stomach	stomach
19	chr14:24758000-24762200	Strong transcription	NHEK	skin
20	chr14:24758000-24765400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:24758000-24766000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:24758400-24761200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:24758400-24762000	Strong transcription	Osteobl	bone
24	chr14:24758400-24762200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:24758400-24762200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:24758400-24762400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:24758400-24762400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr14:24758400-24765200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:24758400-24766000	Strong transcription	Fetal Intestine Large	intestine
30	chr14:24758400-24766400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:24758600-24762000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr14:24758600-24762000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:24758600-24762000	Strong transcription	Esophagus	oesophagus
34	chr14:24758600-24762000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:24758600-24762200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:24758600-24762200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:24758600-24762200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:24758600-24762200	Strong transcription	Adipose Nuclei	Adipose
39	chr14:24758600-24762200	Strong transcription	Brain Anterior Caudate	brain
40	chr14:24758600-24762200	Strong transcription	Brain Cingulate Gyrus	brain
41	chr14:24758600-24762200	Strong transcription	Brain Hippocampus Middle	brain
42	chr14:24758600-24762200	Strong transcription	Brain Substantia Nigra	brain
43	chr14:24758600-24762200	Strong transcription	Colonic Mucosa	Colon
44	chr14:24758600-24762200	Strong transcription	Fetal Muscle Leg	muscle
45	chr14:24758600-24762200	Strong transcription	Fetal Thymus	thymus
46	chr14:24758600-24762200	Strong transcription	Gastric	stomach
47	chr14:24758600-24762200	Strong transcription	Lung	lung
48	chr14:24758600-24762200	Strong transcription	Ovary	ovary
49	chr14:24758600-24762200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:24758600-24762200	Strong transcription	Rectal Smooth Muscle	rectum

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