Variant report

Variant	rs113201748
Chromosome Location	chr10:27001127-27001128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26996672..26998643-chr10:27000088..27002341,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv1798973	chr10:26968171-27001814	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550233	chr10:26968171-27011323	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3487618	chr10:26997046-27003844	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3524271	chr10:26997596-27003294	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3426626	chr10:26997596-27003794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv1792880	chr10:26997918-27001814	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv1802787	chr10:26997918-27001814	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv1816153	chr10:26997918-27001814	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv1794325	chr10:26997925-27001814	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	esv1798522	chr10:26997972-27001814	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	esv3485396	chr10:26998394-27002487	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv991084	chr10:26998462-27001979	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv3524270	chr10:26998466-27002670	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv3524275	chr10:26998839-27002204	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	esv3484284	chr10:26998911-27002234	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
18	esv3488729	chr10:26998911-27002234	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
19	esv1792014	chr10:26998921-27002006	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
20	esv1795238	chr10:26998921-27002006	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
21	esv1816671	chr10:26998921-27002006	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
22	esv1817048	chr10:26998921-27002006	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
23	nsv825311	chr10:26998922-27001340	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv825312	chr10:26998922-27001709	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
25	nsv821589	chr10:26998922-27002006	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
26	nsv825313	chr10:26998922-27002006	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
27	esv3524274	chr10:26998960-27002206	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
28	esv3524276	chr10:26998963-27002204	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
29	esv3524272	chr10:26998963-27002236	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
30	esv3486507	chr10:26998971-27003319	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
31	nsv24807	chr10:26998977-27002114	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
32	esv3423508	chr10:26998980-27002176	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
33	nsv825314	chr10:26999114-27001340	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	esv16803	chr10:26999115-27001854	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
35	nsv819742	chr10:26999121-27002303	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
36	esv1818223	chr10:26999121-27022126	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	esv3430199	chr10:26999296-27003294	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
38	nsv825315	chr10:26999975-27001709	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
39	esv1792415	chr10:27000558-27001814	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
40	esv1792686	chr10:27000558-27001814	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
41	esv1793039	chr10:27000558-27001814	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
42	esv1793980	chr10:27000558-27001814	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
43	esv1794488	chr10:27000558-27001814	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
44	esv1796446	chr10:27000558-27001814	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
45	esv1798995	chr10:27000558-27001814	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
46	esv1800195	chr10:27000558-27001814	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
47	esv1800248	chr10:27000558-27001814	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
48	esv1800723	chr10:27000558-27001814	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
49	esv1802863	chr10:27000558-27001814	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
50	esv1803661	chr10:27000558-27001814	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987600-27010400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:26987600-27024400	Weak transcription	Fetal Kidney	kidney
3	chr10:26987800-27010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:26987800-27020400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
6	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:26988200-27004600	Weak transcription	NH-A	brain
8	chr10:26988200-27009600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:26988200-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:26988400-27009800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
12	chr10:26990400-27002400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:26994200-27007800	Strong transcription	Fetal Stomach	stomach
14	chr10:26994400-27007800	Strong transcription	Thymus	Thymus
15	chr10:26994400-27010600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:26994600-27002400	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:26994600-27004600	Strong transcription	Adipose Nuclei	Adipose
19	chr10:26995400-27023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:26995800-27026600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:26996000-27001800	Strong transcription	A549	lung
22	chr10:26996000-27026600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr10:26996200-27026200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
25	chr10:26996600-27004200	Weak transcription	Colonic Mucosa	Colon
26	chr10:26996600-27012000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:26996600-27022400	Weak transcription	Brain Angular Gyrus	brain
28	chr10:26996600-27023600	Weak transcription	Fetal Heart	heart
29	chr10:26996800-27010600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:26997200-27003400	Weak transcription	Aorta	Aorta
31	chr10:26997200-27004000	Weak transcription	Primary B cells from cord blood	blood
32	chr10:26997200-27004000	Weak transcription	Gastric	stomach
33	chr10:26997200-27010000	Weak transcription	Pancreas	Pancrea
34	chr10:26997200-27012200	Weak transcription	HSMM	muscle
35	chr10:26997200-27022800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:26997200-27024400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:26997400-27002200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:26997400-27002400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:26997400-27002400	Weak transcription	Fetal Lung	lung
40	chr10:26997400-27003400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:26997400-27010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:26997400-27022400	Weak transcription	Brain Substantia Nigra	brain
43	chr10:26997600-27002400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:26997600-27003600	Weak transcription	Osteobl	bone
45	chr10:26997600-27005400	Weak transcription	HUVEC	blood vessel
46	chr10:26997600-27008800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:26997600-27010400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:26997600-27012800	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
50	chr10:26997800-27003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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