Variant report

Variant	rs113206471
Chromosome Location	chr15:82944329-82944330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:82943895-82945715	GM12878	blood:	n/a	chr15:82944688-82944697 chr15:82945274-82945288 chr15:82944686-82944698 chr15:82944686-82944698 chr15:82944687-82944696 chr15:82945177-82945186
2	FOSL2	chr15:82944141-82944962	HepG2	liver:	n/a	n/a
3	SP1	chr15:82944033-82945086	HepG2	liver:	n/a	chr15:82944688-82944697 chr15:82944686-82944698 chr15:82944686-82944698 chr15:82944687-82944696
4	NR3C1	chr15:82944088-82945183	A549	lung:	n/a	n/a
5	FOXA1	chr15:82944178-82945051	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:82944114-82945774	Hela-S3	cervix:	n/a	n/a
7	TCF12	chr15:82944187-82944350	GM12878	blood:	n/a	n/a
8	PAX5	chr15:82944117-82945720	GM12878	blood:	n/a	n/a
9	PAX5	chr15:82944051-82945763	GM12878	blood:	n/a	n/a
10	POLR2A	chr15:82943984-82945820	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr15:82944078-82945739	GM12878	blood:	n/a	n/a
12	POLR2A	chr15:82944135-82945196	GM12891	blood:	n/a	n/a
13	NR3C1	chr15:82944115-82945745	A549	lung:	n/a	n/a
14	JUND	chr15:82944236-82944362	HepG2	liver:	n/a	n/a
15	POU2F2	chr15:82943516-82945803	GM12878	blood:	n/a	chr15:82943708-82943722 chr15:82945334-82945346 chr15:82943711-82943718
16	TAF1	chr15:82944301-82945133	A549	lung:	n/a	n/a
17	POLR2A	chr15:82944217-82945683	Hela-S3	cervix:	n/a	n/a
18	SIX5	chr15:82944166-82945122	K562	blood:	n/a	n/a
19	TAF1	chr15:82944190-82945114	Hela-S3	cervix:	n/a	n/a
20	IRF4	chr15:82944012-82945128	GM12878	blood:	n/a	n/a
21	EBF1	chr15:82944059-82945098	GM12878	blood:	n/a	n/a
22	POLR2A	chr15:82944208-82945171	GM12891	blood:	n/a	n/a
23	POLR2A	chr15:82944164-82945203	GM12891	blood:	n/a	n/a
24	HEY1	chr15:82944288-82945185	HepG2	liver:	n/a	n/a
25	SIN3AK20	chr15:82944280-82945164	HepG2	liver:	n/a	n/a
26	PAX5	chr15:82944143-82945705	GM12878	blood:	n/a	n/a
27	BATF	chr15:82944111-82945156	GM12878	blood:	n/a	n/a
28	ZBTB33	chr15:82944117-82945010	GM12878	blood:	n/a	n/a
29	SIN3AK20	chr15:82944246-82945689	HepG2	liver:	n/a	n/a
30	RXRA	chr15:82944150-82944938	GM12878	blood:	n/a	n/a
31	POLR2A	chr15:82944306-82945158	SK-N-MC	brain:	n/a	n/a
32	EP300	chr15:82944258-82944740	GM12878	blood:	n/a	n/a
33	POLR2A	chr15:82944007-82945198	GM12892	blood:	n/a	n/a
34	POLR2A	chr15:82944215-82945140	GM12892	blood:	n/a	n/a
35	SP1	chr15:82944313-82945044	A549	lung:	n/a	chr15:82944688-82944697 chr15:82944686-82944698 chr15:82944686-82944698 chr15:82944687-82944696
36	TAF1	chr15:82944226-82945105	GM12878	blood:	n/a	n/a
37	SIX5	chr15:82944221-82944805	GM12878	blood:	n/a	n/a
38	BCL11A	chr15:82944227-82945197	GM12878	blood:	n/a	chr15:82945033-82945041
39	POLR2A	chr15:82944272-82945169	GM12878	blood:	n/a	n/a
40	TAF1	chr15:82944222-82945212	Hela-S3	cervix:	n/a	n/a
41	ZBTB33	chr15:82944297-82945033	K562	blood:	n/a	n/a
42	CTCF	chr15:82944203-82945182	A549	lung:	n/a	n/a
43	USF1	chr15:82944067-82945047	A549	lung:	n/a	n/a
44	FOSL2	chr15:82944141-82945722	HepG2	liver:	n/a	chr15:82945222-82945231 chr15:82945466-82945475
45	TAF1	chr15:82944143-82945753	H1-hESC	embryonic stem cell:	n/a	n/a
46	SP1	chr15:82943782-82945019	GM12878	blood:	n/a	chr15:82944688-82944697 chr15:82944686-82944698 chr15:82944686-82944698 chr15:82944687-82944696
47	ZBTB33	chr15:82944289-82944997	HepG2	liver:	n/a	n/a
48	SPI1	chr15:82944324-82944883	K562	blood:	n/a	n/a
49	PBX3	chr15:82944204-82945122	GM12878	blood:	n/a	chr15:82944727-82944747
50	POLR2A	chr15:82944084-82945508	GM12892	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:82944287-82944337	NHDF-neo	bronchial:	n/a
2	chr15:82944287-82944337	HCPEpiC	choroid plexus:	n/a
3	chr15:82944287-82944337	HAEpiC	amniotic membrane:	n/a
4	chr15:82944287-82944337	IMR90	lung:	fetal
5	chr15:82944287-82944337	HIPEpiC	eye:	n/a
6	chr15:82944287-82944337	HUVEC	blood vessel:	n/a
7	chr15:82944287-82944337	ECC-1	luminal epithelium:	n/a
8	chr15:82944287-82944337	NHBE	bronchial:	n/a
9	chr15:82944287-82944337	T-47D	breast:	n/a
10	chr15:82944287-82944337	SAEC	small airway:	n/a
11	chr15:82944287-82944337	CMK	blood:	n/a
12	chr15:82944287-82944337	HRPEpiC	eye:	n/a
13	chr15:82944287-82944337	HPAEpiC	pulmonary alveolar:	n/a
14	chr15:82944287-82944337	ovcar-3	ovarian:	n/a
15	chr15:82944287-82944337	SK-N-SH_RA	brain:	n/a
16	chr15:82944287-82944337	AG10803	skin:	n/a
17	chr15:82944287-82944337	RPTEC	kidney:	n/a
18	chr15:82944287-82944337	Jurkat	blood:	n/a
19	chr15:82944287-82944337	Caco-2	colon:	n/a
20	chr15:82944287-82944337	U87	brain:	n/a
21	chr15:82944287-82944337	Hepatocyte	liver:	n/a
22	chr15:82944287-82944337	HL-60	blood:	n/a
23	chr15:82944287-82944337	GM19239	blood:	n/a
24	chr15:82944287-82944337	AoSMC	blood vessel:	n/a
25	chr15:82944287-82944337	LNCaP	prostate:	n/a
26	chr15:82944287-82944337	HNPCEpiC	eye:	n/a
27	chr15:82944287-82944337	ProgFib	skin:	n/a
28	chr15:82944287-82944337	NT2-D1	testis:	n/a
29	chr15:82944287-82944337	HEEpiC	esophagus:	n/a
30	chr15:82944287-82944337	SK-N-MC	brain:	n/a
31	chr15:82944287-82944337	PANC-1	pancreas:	n/a
32	chr15:82944287-82944337	AG09309	skin:	n/a
33	chr15:82944287-82944337	GM12891	blood:	n/a
34	chr15:82944287-82944337	K562	blood:	n/a
35	chr15:82944287-82944337	HepG2	liver:	n/a
36	chr15:82944287-82944337	AG04450	lung:	fetal
37	chr15:82944287-82944337	HRE	kidney:	n/a
38	chr15:82944287-82944337	HRCEpiC	kidney:	n/a
39	chr15:82944287-82944337	MCF10A-Er-Src	breast:	n/a
40	chr15:82944287-82944337	GM12892	blood:	n/a
41	chr15:82944287-82944337	BJ	skin:	n/a
42	chr15:82944287-82944337	AG04449	skin:	fetal
43	chr15:82944287-82944337	PrEC	prostate:	n/a
44	chr15:82944287-82944337	PFSK-1	brain:	n/a
45	chr15:82944287-82944337	HEK293	kidney:	embryo
46	chr15:82944287-82944337	NB4	blood:	n/a
47	chr15:82944287-82944337	MCF-7	breast:	n/a
48	chr15:82944287-82944337	Hela-S3	cervix:	n/a
49	chr15:82944287-82944337	SKMC	muscle:	n/a
50	chr15:82944287-82944337	HCT-116	colon:	n/a

Variant related genes	Relation type
ENSG00000259328	TF binding region
ENSG00000259328	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv510669	chr15:82600766-83011258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1820106	chr15:82606410-83202155	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1053566	chr15:82606410-83204498	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv33165	chr15:82664410-83041871	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1046321	chr15:82680087-83202155	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv9285	chr15:82721187-83054193	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	20 gene(s)	inside rSNPs	diseases
8	esv1829503	chr15:82723361-83036588	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv427965	chr15:82741381-83310525	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv428309	chr15:82741381-83310525	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	esv2758391	chr15:82879646-83310525	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	esv2760046	chr15:82879646-83310525	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv428802	chr15:82879650-83107710	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
14	esv17433	chr15:82879700-83054275	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv1813164	chr15:82903624-83029649	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv977745	chr15:82912356-83068886	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
17	esv20276	chr15:82935155-82963316	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv833069	chr15:82936700-83159994	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	15 gene(s)	inside rSNPs	diseases
19	esv21199	chr15:82937569-83057978	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv11776	chr15:82937940-82992972	Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
21	esv1812120	chr15:82942285-82967955	Enhancers Active TSS Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
22	esv3356498	chr15:82943922-82947270	Active TSS Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82944200-82944600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:82944200-82945200	Active TSS	Fetal Intestine Large	intestine
3	chr15:82944200-82945400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr15:82944200-82945800	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links