Variant report

Variant	rs1132200
Chromosome Location	chr3:119150836-119150837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119145344..119146916-chr3:119149020..119151478,2	MCF-7	breast:
2	chr3:119150195..119152799-chr3:119173269..119174905,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1131265	0.88[TSI][hapmap]
rs12494314	0.84[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs12636784	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs13078855	0.81[TSI][hapmap]
rs2293370	0.88[TSI][hapmap]
rs2305249	0.84[CEU][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs3732421	0.84[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs7650774	0.84[CEU][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs9834901	0.86[EUR][1000 genomes]
rs9855065	0.84[CEU][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs9884090	0.91[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119138000-119152400	Weak transcription	Lung	lung
2	chr3:119144600-119152000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:119145600-119152000	ZNF genes & repeats	Fetal Lung	lung
4	chr3:119145800-119151000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr3:119145800-119151800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:119146600-119151000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:119147000-119151800	Strong transcription	NH-A	brain
8	chr3:119147000-119152800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:119147000-119179000	Strong transcription	Osteobl	bone
10	chr3:119147200-119152200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr3:119147200-119180400	Weak transcription	Stomach Mucosa	stomach
12	chr3:119147400-119151000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:119147400-119152800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:119147400-119157200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:119147400-119179200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:119147600-119151000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr3:119147600-119157200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:119147600-119157400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:119147600-119157400	Strong transcription	Fetal Thymus	thymus
20	chr3:119147800-119151000	Strong transcription	Left Ventricle	heart
21	chr3:119147800-119151200	Strong transcription	HSMMtube	muscle
22	chr3:119147800-119154400	Strong transcription	K562	blood
23	chr3:119147800-119157000	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr3:119147800-119157000	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr3:119147800-119157200	Strong transcription	Rectal Smooth Muscle	rectum
26	chr3:119147800-119157400	Strong transcription	Placenta	Placenta
27	chr3:119147800-119157400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:119147800-119157600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr3:119147800-119157600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr3:119147800-119159400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:119148000-119151000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr3:119148000-119151000	ZNF genes & repeats	Aorta	Aorta
33	chr3:119148000-119151200	Strong transcription	Brain Anterior Caudate	brain
34	chr3:119148000-119151200	Strong transcription	HMEC	breast
35	chr3:119148000-119157000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:119148000-119157000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:119148000-119157000	Strong transcription	Brain Cingulate Gyrus	brain
38	chr3:119148000-119162200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:119148200-119151800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:119148200-119151800	Strong transcription	Adipose Nuclei	Adipose
41	chr3:119148200-119157000	Strong transcription	NHLF	lung
42	chr3:119148200-119157200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:119148200-119157200	Strong transcription	Brain Hippocampus Middle	brain
44	chr3:119148400-119151000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr3:119148400-119151200	Strong transcription	Pancreatic Islets	Pancreatic Islet
46	chr3:119148400-119153200	Strong transcription	Fetal Stomach	stomach
47	chr3:119148400-119156800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr3:119148400-119157000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr3:119148400-119157200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:119148400-119157200	Strong transcription	Brain Inferior Temporal Lobe	brain

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