Variant report

Variant	rs113263917
Chromosome Location	chr10:28665416-28665417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28591043..28593687-chr10:28664623..28666439,2	MCF-7	breast:
2	chr10:28663936..28666501-chr10:28668438..28671380,2	MCF-7	breast:
3	chr10:28591610..28593155-chr10:28664575..28666519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv3314352	chr10:28662046-28666844	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3337700	chr10:28663096-28666094	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv825321	chr10:28663311-28665674	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3314330	chr10:28663394-28665555	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv10367	chr10:28663482-28665664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1835803	chr10:28663605-28665418	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv550308	chr10:28664080-28665418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv550320	chr10:28664275-28665418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28659600-28667800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28659800-28667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:28660000-28668200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:28660400-28667600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:28663800-28666000	Enhancers	HepG2	liver
6	chr10:28664400-28665800	Enhancers	Aorta	Aorta
7	chr10:28664400-28666200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:28664400-28666800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:28664800-28666000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr10:28664800-28670600	Weak transcription	HSMM	muscle
11	chr10:28665000-28666000	Enhancers	Placenta	Placenta
12	chr10:28665000-28667600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:28665200-28665600	Enhancers	Pancreas	Pancrea
14	chr10:28665200-28665800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:28665200-28667800	Weak transcription	NHEK	skin
16	chr10:28665200-28675600	Weak transcription	Hela-S3	cervix
17	chr10:28665400-28665600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:28665400-28665800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:28665400-28665800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:28665400-28665800	Enhancers	Lung	lung
21	chr10:28665400-28667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:28665400-28667800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links