Variant report

Variant	rs113289904
Chromosome Location	chr9:101867768-101867769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:44162667..44163261-chr9:101867005..101867915,2	Hela-S3	cervix:
2	chr7:37959940..37960879-chr9:101867147..101867963,2	Hela-S3	cervix:
3	chr9:101866361..101869341-chr9:101886452..101890095,3	MCF-7	breast:
4	chr9:101866534..101869508-chr9:101907295..101910821,3	MCF-7	breast:
5	chr9:101608539..101611289-chr9:101866226..101869142,2	MCF-7	breast:
6	chr9:101717329..101720202-chr9:101867499..101869138,2	K562	blood:
7	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:
8	chr14:74959586..74960164-chr9:101867006..101867798,2	Hela-S3	cervix:
9	chr9:101632178..101635172-chr9:101866283..101867803,2	K562	blood:
10	chr15:99190239..99192114-chr9:101866946..101869163,2	MCF-7	breast:
11	chr6:89790459..89790962-chr9:101867304..101867920,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000106628	Chromatin interaction
ENSG00000267026	Chromatin interaction
ENSG00000119655	Chromatin interaction
ENSG00000252942	Chromatin interaction
ENSG00000119514	Chromatin interaction
ENSG00000146278	Chromatin interaction
ENSG00000086289	Chromatin interaction
ENSG00000106799	Chromatin interaction
ENSG00000259424	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3327607	chr9:101866156-101869104	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3370567	chr9:101866606-101868779	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101866000-101868600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:101866000-101868600	Active TSS	H1 Cell Line	embryonic stem cell
3	chr9:101866000-101868600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:101866000-101868800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:101866200-101868400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr9:101866200-101868400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:101866200-101868400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:101866200-101868400	Active TSS	Brain Anterior Caudate	brain
9	chr9:101866200-101868600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:101866200-101868600	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr9:101866200-101868600	Active TSS	NHDF-Ad	bronchial
12	chr9:101866400-101868400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr9:101866400-101868400	Active TSS	Colon Smooth Muscle	Colon
14	chr9:101866400-101868400	Active TSS	Esophagus	oesophagus
15	chr9:101866400-101868400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr9:101866400-101868600	Active TSS	Brain Angular Gyrus	brain
17	chr9:101866400-101868600	Active TSS	Brain Germinal Matrix	brain
18	chr9:101866400-101868600	Active TSS	Ovary	ovary
19	chr9:101866400-101868800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:101866400-101868800	Active TSS	Right Ventricle	heart
21	chr9:101866400-101869200	Active TSS	Aorta	Aorta
22	chr9:101866600-101868400	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:101866600-101868400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr9:101866600-101868400	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr9:101866600-101868400	Active TSS	Spleen	Spleen
26	chr9:101866600-101868600	Active TSS	Stomach Smooth Muscle	stomach
27	chr9:101866600-101868800	Active TSS	Fetal Brain Female	brain
28	chr9:101866600-101868800	Active TSS	Placenta Amnion	Placenta Amnion
29	chr9:101866600-101868800	Active TSS	Psoas Muscle	Psoas
30	chr9:101866600-101869400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr9:101866800-101867800	Active TSS	Thymus	Thymus
32	chr9:101866800-101868200	Active TSS	Brain Hippocampus Middle	brain
33	chr9:101866800-101868200	Active TSS	Fetal Stomach	stomach
34	chr9:101866800-101868400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:101866800-101868400	Active TSS	Brain Cingulate Gyrus	brain
36	chr9:101866800-101868400	Active TSS	Gastric	stomach
37	chr9:101866800-101868400	Active TSS	NHLF	lung
38	chr9:101866800-101868600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:101866800-101868600	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr9:101866800-101868800	Active TSS	Brain Substantia Nigra	brain
41	chr9:101866800-101868800	Active TSS	Right Atrium	heart
42	chr9:101866800-101869200	Active TSS	Left Ventricle	heart
43	chr9:101866800-101869600	Active TSS	Lung	lung
44	chr9:101867000-101867800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr9:101867000-101867800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:101867000-101867800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:101867000-101868000	Active TSS	Primary B cells from cord blood	blood
48	chr9:101867000-101868000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr9:101867000-101868000	Active TSS	Liver	Liver
50	chr9:101867000-101868000	Active TSS	Fetal Thymus	thymus

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