The 2.0 version of rSNPBase

Variant report

Variant rs113312666
Chromosome Location chr1:213372469-213372470
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:213301000-213374800 Weak transcription HSMM muscle
2 chr1:213326600-213422200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr1:213328200-213387200 Weak transcription Spleen Spleen
4 chr1:213337800-213374400 Weak transcription Muscle Satellite Cultured Cells --
5 chr1:213340600-213424600 Weak transcription Pancreas Pancrea
6 chr1:213345600-213404600 Weak transcription Osteobl bone
7 chr1:213346200-213387400 Weak transcription Gastric stomach
8 chr1:213350400-213383200 Weak transcription Placenta Placenta
9 chr1:213357800-213387200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:213358000-213375000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:213360400-213373200 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:213360400-213405200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:213360600-213378000 Weak transcription Stomach Smooth Muscle stomach
14 chr1:213361600-213386600 Weak transcription Aorta Aorta
15 chr1:213362200-213415400 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:213364400-213372800 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr1:213368200-213378200 Weak transcription K562 blood
18 chr1:213368200-213386600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:213368200-213387200 Weak transcription Lung lung
20 chr1:213369600-213388800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:213369800-213398200 Weak transcription Fetal Heart heart
22 chr1:213370000-213374400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr1:213370600-213380200 Weak transcription Fetal Stomach stomach
24 chr1:213370800-213372800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
25 chr1:213370800-213380600 Weak transcription HUES64 Cell Line embryonic stem cell
26 chr1:213370800-213427600 Weak transcription Rectal Smooth Muscle rectum
27 chr1:213371000-213373000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:213371000-213373000 ZNF genes & repeats Primary T cells from cord blood blood
29 chr1:213371000-213373200 ZNF genes & repeats Primary B cells from cord blood blood
30 chr1:213371000-213389400 Weak transcription Right Ventricle heart
31 chr1:213371200-213372600 Strong transcription Primary T helper naive cells fromperipheralblood blood
32 chr1:213371200-213372600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
33 chr1:213371200-213372800 ZNF genes & repeats Liver Liver
34 chr1:213371400-213372800 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:213371400-213374600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:213371600-213372800 Strong transcription Primary T helper cells fromperipheralblood blood
37 chr1:213371600-213373000 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr1:213371600-213373000 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr1:213371600-213373200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr1:213371600-213373200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:213371600-213373400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:213371600-213374400 ZNF genes & repeats Fetal Muscle Leg muscle
43 chr1:213371600-213385000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:213371600-213385400 Weak transcription NHDF-Ad bronchial
45 chr1:213371800-213372800 Weak transcription Primary T killer naive cells fromperipheralblood blood
46 chr1:213371800-213373000 Strong transcription Rectal Mucosa Donor 29 rectum
47 chr1:213371800-213373200 Strong transcription Primary T cells fromperipheralblood blood
48 chr1:213371800-213373400 Strong transcription Adipose Nuclei Adipose
49 chr1:213371800-213373400 Strong transcription Fetal Lung lung
50 chr1:213371800-213374400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015