Variant report

Variant	rs113335901
Chromosome Location	chr13:51922921-51922922
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:51922670-51922972	A549	lung:	n/a	n/a

Variant related genes	Relation type
MIR5693	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3424137	chr13:51922820-51922985	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
3	chr13:51906200-51935400	Weak transcription	HSMMtube	muscle
4	chr13:51907800-51933200	Weak transcription	Primary T cells from cord blood	blood
5	chr13:51911800-51938600	Weak transcription	Pancreas	Pancrea
6	chr13:51913400-51944600	Weak transcription	Aorta	Aorta
7	chr13:51914200-51926600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51915200-51929400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:51915400-51934000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:51915800-51925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:51916800-51931600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr13:51917200-51933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:51917600-51926600	Weak transcription	HSMM	muscle
14	chr13:51917600-51933000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:51917600-51943200	Weak transcription	NHLF	lung
16	chr13:51917800-51942400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:51918000-51925400	Weak transcription	Liver	Liver
18	chr13:51918200-51933200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:51918400-51938600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:51918600-51935600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:51918600-51945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:51919000-51944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:51920200-51935800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:51921200-51923600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr13:51921200-51926800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr13:51921400-51927400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr13:51921400-51935400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr13:51921400-51938400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:51921400-51938800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:51922400-51924000	Enhancers	Fetal Lung	lung
31	chr13:51922400-51936600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:51922800-51923800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:51922800-51924400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:51922800-51941200	Weak transcription	Fetal Muscle Trunk	muscle

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