Variant report

Variant	rs113341223
Chromosome Location	chr5:177098108-177098109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv969021	chr5:177060702-177111251	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3343343	chr5:177097871-177100719	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177076800-177098200	Weak transcription	Fetal Stomach	stomach
2	chr5:177077000-177098200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:177094200-177098200	Weak transcription	Ovary	ovary
4	chr5:177095600-177098200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:177096000-177098200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:177096600-177098200	Enhancers	Dnd41	blood
7	chr5:177096800-177098400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:177097000-177098200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:177097000-177098200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:177097000-177098200	Weak transcription	Adipose Nuclei	Adipose
11	chr5:177097000-177099000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:177097000-177099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:177097200-177098200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:177097200-177098200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr5:177097200-177098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:177097200-177099000	Weak transcription	Thymus	Thymus
17	chr5:177097400-177098200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:177097400-177098200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:177097400-177098200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:177097400-177098200	Weak transcription	Stomach Mucosa	stomach
21	chr5:177097400-177098200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:177097400-177099600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr5:177097400-177100600	Weak transcription	Primary B cells from cord blood	blood
24	chr5:177097600-177099200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:177098000-177098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:177098000-177098600	Enhancers	Primary neutrophils fromperipheralblood	blood

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