Variant report

Variant	rs113341861
Chromosome Location	chr13:110417818-110417819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110417399..110417917-chr13:110760942..110761494,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A1-5	chr13:110417658-110418068	NONHSAT035118

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv526943	chr13:110393477-110421884	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv826790	chr13:110395165-110463032	Weak transcription Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv826791	chr13:110397733-110462553	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv826792	chr13:110398678-110462209	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1047427	chr13:110412864-110446417	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv563072	chr13:110415013-110418971	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3520397	chr13:110416151-110421049	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3520408	chr13:110416151-110421049	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3528392	chr13:110416751-110420249	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3403446	chr13:110417051-110420149	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv9108	chr13:110417229-110421996	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3528394	chr13:110417251-110419599	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv2500078	chr13:110417261-110419401	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3393063	chr13:110417376-110420324	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv512337	chr13:110417619-110419260	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv3345288	chr13:110417665-110419243	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv3429604	chr13:110417669-110419273	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv1796557	chr13:110417676-110419171	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv1801437	chr13:110417676-110419171	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1805712	chr13:110417676-110419171	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv1816038	chr13:110417676-110419171	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	esv1822912	chr13:110417676-110419171	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv1830899	chr13:110417676-110419171	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv1831957	chr13:110417676-110419171	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv1847366	chr13:110417676-110419171	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv3528393	chr13:110417728-110419212	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv3528397	chr13:110417728-110419212	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110397000-110428800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:110397200-110430400	Weak transcription	NHLF	lung
3	chr13:110397400-110419400	Weak transcription	Lung	lung
4	chr13:110401800-110430800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:110403200-110430600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:110406200-110429400	Weak transcription	Primary B cells from cord blood	blood
7	chr13:110407400-110423400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:110408600-110421600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:110408600-110422800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr13:110408600-110423800	Weak transcription	Placenta	Placenta
11	chr13:110408600-110424400	Weak transcription	Spleen	Spleen
12	chr13:110408600-110430400	Weak transcription	Colonic Mucosa	Colon
13	chr13:110408800-110420800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr13:110408800-110421400	Weak transcription	Fetal Intestine Large	intestine
15	chr13:110408800-110421800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr13:110408800-110422800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr13:110408800-110423600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:110409000-110422600	Weak transcription	Fetal Lung	lung
19	chr13:110409000-110431200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:110409200-110422200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:110409200-110422600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr13:110409200-110423000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:110409400-110429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:110409400-110430200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr13:110411600-110422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:110411800-110420800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr13:110411800-110421800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr13:110412200-110422400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:110412600-110418000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:110413200-110418200	Genic enhancers	HSMM	muscle
31	chr13:110413200-110419200	Weak transcription	Gastric	stomach
32	chr13:110413400-110430400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr13:110413600-110419200	Weak transcription	Pancreas	Pancrea
34	chr13:110413600-110430800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr13:110414000-110424400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr13:110414400-110418000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:110414400-110428800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:110415000-110428800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:110415200-110420200	Weak transcription	Fetal Intestine Small	intestine
40	chr13:110415400-110421000	Weak transcription	Aorta	Aorta
41	chr13:110415800-110419200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr13:110416000-110430800	Weak transcription	Fetal Kidney	kidney
43	chr13:110416400-110418200	Enhancers	Primary T cells from cord blood	blood
44	chr13:110416400-110418200	Enhancers	Ovary	ovary
45	chr13:110416600-110418400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr13:110417000-110419200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr13:110417000-110432400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr13:110417200-110418000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr13:110417200-110418000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr13:110417200-110424600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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