Variant report

Variant	rs11335709
Chromosome Location	chr19:38505313-38505314
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38504278..38506412-chr19:38570707..38572252,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv911656	chr19:38505037-38539988	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38474800-38513600	Weak transcription	Gastric	stomach
2	chr19:38495400-38522800	Weak transcription	Aorta	Aorta
3	chr19:38495400-38526400	Weak transcription	Ovary	ovary
4	chr19:38495600-38509200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:38495600-38512800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr19:38495600-38513400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr19:38495600-38514200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr19:38495800-38510000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr19:38495800-38513400	Weak transcription	Stomach Mucosa	stomach
10	chr19:38496000-38505600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr19:38496200-38508000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:38496200-38508200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr19:38496200-38509400	Weak transcription	HSMMtube	muscle
14	chr19:38496200-38512600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:38496200-38513600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr19:38496200-38513600	Weak transcription	Left Ventricle	heart
17	chr19:38496200-38513600	Weak transcription	Right Ventricle	heart
18	chr19:38496200-38513600	Weak transcription	NHEK	skin
19	chr19:38496200-38521400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr19:38496400-38510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:38496400-38511000	Weak transcription	Brain Germinal Matrix	brain
22	chr19:38496400-38521400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:38496600-38513600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr19:38496600-38515600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:38496800-38506600	Weak transcription	Osteobl	bone
26	chr19:38496800-38509400	Weak transcription	HUVEC	blood vessel
27	chr19:38496800-38520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:38497000-38513400	Weak transcription	NHLF	lung
29	chr19:38497400-38511800	Weak transcription	NH-A	brain
30	chr19:38497400-38515800	Weak transcription	Fetal Brain Male	brain
31	chr19:38497400-38520600	Weak transcription	Primary T cells from cord blood	blood
32	chr19:38497600-38513600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr19:38498200-38514800	Weak transcription	HepG2	liver
34	chr19:38500600-38524200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr19:38501000-38521400	Weak transcription	Thymus	Thymus
36	chr19:38501400-38507400	Strong transcription	GM12878-XiMat	blood
37	chr19:38501800-38511000	Weak transcription	HSMM	muscle
38	chr19:38502000-38506000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr19:38502400-38505800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:38502400-38523000	Weak transcription	Liver	Liver
41	chr19:38502600-38512600	Weak transcription	Pancreas	Pancrea
42	chr19:38502800-38505600	Weak transcription	Primary B cells from cord blood	blood
43	chr19:38503000-38506800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr19:38503000-38511000	Weak transcription	Spleen	Spleen
45	chr19:38503600-38513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr19:38503800-38506000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr19:38503800-38507400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr19:38503800-38508200	Strong transcription	A549	lung
49	chr19:38503800-38509800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr19:38503800-38509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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