Variant report

Variant	rs113376862
Chromosome Location	chr9:103049284-103049285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103048911..103050784-chr9:103054222..103056067,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv972794	chr9:103048878-103055461	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:102979400-103054600	Weak transcription	NHEK	skin
3	chr9:102987400-103054600	Weak transcription	Gastric	stomach
4	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
5	chr9:103029000-103053600	Weak transcription	Hela-S3	cervix
6	chr9:103029200-103054600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:103040400-103053000	Weak transcription	NHLF	lung
8	chr9:103040400-103058600	Weak transcription	NH-A	brain
9	chr9:103044000-103067800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:103044200-103071200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:103044600-103102400	Weak transcription	Stomach Mucosa	stomach
12	chr9:103044800-103049600	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:103044800-103067800	Strong transcription	Stomach Smooth Muscle	stomach
14	chr9:103045200-103053000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:103045800-103050800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:103045800-103051200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr9:103045800-103051200	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr9:103045800-103052000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:103045800-103052000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:103045800-103052200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:103046000-103051200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr9:103046000-103051600	Strong transcription	Placenta	Placenta
23	chr9:103046000-103052000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:103046000-103052400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:103046000-103075400	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr9:103046200-103050400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr9:103046200-103050600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:103046200-103051600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr9:103046200-103060000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:103046200-103072800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:103046400-103050000	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr9:103046400-103050600	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr9:103046400-103104000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:103046600-103050600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr9:103046600-103051000	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr9:103046600-103051200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr9:103046600-103092400	Strong transcription	Fetal Thymus	thymus
38	chr9:103046800-103050600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:103046800-103050600	ZNF genes & repeats	A549	lung
40	chr9:103046800-103055400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:103047000-103049400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:103047000-103049400	Weak transcription	Lung	lung
43	chr9:103047000-103049600	Weak transcription	Aorta	Aorta
44	chr9:103047000-103049600	Weak transcription	Psoas Muscle	Psoas
45	chr9:103047000-103050200	Weak transcription	Right Ventricle	heart
46	chr9:103047000-103052800	Weak transcription	Esophagus	oesophagus
47	chr9:103047000-103053400	Weak transcription	Spleen	Spleen
48	chr9:103047000-103057000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:103047000-103061400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:103047200-103050600	ZNF genes & repeats	GM12878-XiMat	blood

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