Variant report

Variant	rs113402355
Chromosome Location	chr13:49528179-49528180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1034	chr13:49526761-49572727	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49521600-49529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:49525200-49528200	Weak transcription	Fetal Intestine Small	intestine
3	chr13:49525400-49528200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:49525400-49528200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:49525600-49528200	Weak transcription	HMEC	breast
6	chr13:49526000-49529000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr13:49527600-49528200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:49527600-49529200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:49527800-49528800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:49527800-49528800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr13:49527800-49528800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:49527800-49528800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr13:49527800-49528800	Enhancers	Fetal Kidney	kidney
14	chr13:49527800-49530600	Enhancers	Fetal Intestine Large	intestine
15	chr13:49528000-49528200	Enhancers	Osteobl	bone
16	chr13:49528000-49528600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:49528000-49528800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:49528000-49529200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links