Variant report

Variant	rs113427396
Chromosome Location	chr1:171570221-171570222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRRC2C-5	chr1:171570022-171570952	NONHSAT007542

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3399610	chr1:171569794-171575719	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171558800-171573200	Weak transcription	Small Intestine	intestine
2	chr1:171561600-171572200	Weak transcription	Aorta	Aorta
3	chr1:171561800-171570400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:171561800-171572200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:171561800-171576600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:171562000-171572000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:171562200-171571800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:171562200-171575600	Weak transcription	HepG2	liver
9	chr1:171562800-171572000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:171562800-171572200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:171563200-171572000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:171564000-171572200	Weak transcription	Fetal Kidney	kidney
13	chr1:171564400-171570600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:171564400-171572000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:171564400-171573000	Weak transcription	Adipose Nuclei	Adipose
16	chr1:171566200-171572000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:171569200-171576400	Weak transcription	GM12878-XiMat	blood
18	chr1:171570200-171570400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:171570200-171570400	Enhancers	Brain Anterior Caudate	brain
20	chr1:171570200-171570400	Enhancers	Lung	lung
21	chr1:171570200-171575600	Weak transcription	Liver	Liver

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