Variant report

Variant	rs1134444
Chromosome Location	chr15:31515212-31515213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31505148..31511050-chr15:31511462..31517687,6	K562	blood:
2	chr15:31513902..31515843-chr15:31521318..31523081,2	MCF-7	breast:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRPM1-1	chr15:31514957-31515354	XLOC_011413
2	lnc-TRPM1-1	chr15:31514957-31515310	XLOC_011413
3	lnc-TRPM1-1	chr15:31514978-31515354	XLOC_011413
4	lnc-TRPM1-1	chr15:31514686-31515310	XLOC_011413
5	lnc-TRPM1-1	chr15:31514957-31515246	XLOC_011413
6	lnc-TRPM1-1	chr15:31514042-31515539	XLOC_011413
7	lnc-TRPM1-1	chr15:31514957-31515310	XLOC_011413
8	lnc-TRPM1-1	chr15:31514957-31515246	XLOC_011413
9	lnc-TRPM1-1	chr15:31514928-31515310	XLOC_011413
10	lnc-TRPM1-1	chr15:31514978-31515915	XLOC_011413
11	lnc-TRPM1-1	chr15:31515040-31515539	ENSG00000259772.1
12	lnc-TRPM1-1	chr15:31515166-31515634	ENSG00000259772.1
13	lnc-TRPM1-1	chr15:31514979-31515310	ENSG00000259772.1
14	lnc-TRPM1-1	chr15:31514999-31515354	ENSG00000259772.1
15	lnc-TRPM1-1	chr15:31514970-31515539	ENSG00000259772.2

No data

Variant related genes	Relation type
ENSG00000259772	Chromatin interaction
ENSG00000259448	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11070871	0.91[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11630040	0.82[JPT][hapmap]
rs11633368	0.87[ASN][1000 genomes]
rs3743237	0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4270138	0.87[ASN][1000 genomes]
rs4779841	0.88[ASN][1000 genomes]
rs4779842	0.88[ASN][1000 genomes]
rs8023548	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv977067	chr15:31509197-31523063	Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31508400-31516000	Weak transcription	Aorta	Aorta
2	chr15:31509200-31515400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:31509200-31515400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:31509200-31515400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:31509600-31515400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:31509600-31520600	Weak transcription	HepG2	liver
7	chr15:31510400-31515400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:31510800-31520600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:31511000-31515400	Weak transcription	Right Atrium	heart
10	chr15:31512200-31515600	Strong transcription	GM12878-XiMat	blood
11	chr15:31513200-31518000	Enhancers	Fetal Thymus	thymus
12	chr15:31513800-31515600	Enhancers	Fetal Intestine Large	intestine
13	chr15:31513800-31517400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:31514000-31515600	Enhancers	Thymus	Thymus
15	chr15:31514000-31515800	Enhancers	Fetal Intestine Small	intestine
16	chr15:31514000-31516600	Enhancers	Duodenum Mucosa	Duodenum
17	chr15:31514000-31516800	Enhancers	Primary hematopoietic stem cells	blood
18	chr15:31514000-31517600	Enhancers	Primary B cells from cord blood	blood
19	chr15:31514200-31515400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:31514200-31515600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:31514200-31515600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:31514200-31515600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:31514200-31515800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:31514200-31515800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:31514200-31516000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:31514200-31516200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:31514200-31516600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr15:31514200-31516600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:31514200-31516600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr15:31514200-31516800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr15:31514200-31516800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr15:31514200-31517000	Enhancers	Esophagus	oesophagus
33	chr15:31514200-31517000	Enhancers	Spleen	Spleen
34	chr15:31514200-31517200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr15:31514200-31517400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr15:31514200-31517800	Enhancers	Stomach Mucosa	stomach
37	chr15:31514400-31515400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr15:31514400-31515800	Enhancers	Brain Hippocampus Middle	brain
39	chr15:31514400-31516000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:31514400-31516000	Enhancers	Brain Angular Gyrus	brain
41	chr15:31514400-31516200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:31514400-31516200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:31514400-31516200	Weak transcription	Pancreas	Pancrea
44	chr15:31514400-31516600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:31514400-31517000	Enhancers	Primary T cells from cord blood	blood
46	chr15:31514600-31515400	Enhancers	Small Intestine	intestine
47	chr15:31514600-31515600	Enhancers	Gastric	stomach
48	chr15:31514600-31515800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
49	chr15:31514600-31516200	Enhancers	Brain Substantia Nigra	brain
50	chr15:31514600-31516200	Weak transcription	Psoas Muscle	Psoas

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