Variant report

Variant	rs113470673
Chromosome Location	chr1:151937232-151937233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151932606..151935514-chr1:151936511..151938848,2	MCF-7	breast:
2	chr1:149857621..149859138-chr1:151936767..151938512,2	MCF-7	breast:
3	chr1:151881894..151884208-chr1:151935307..151938264,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000159445	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases
6	nsv2855	chr1:151936470-151966381	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151930800-151940800	Weak transcription	NHDF-Ad	bronchial
2	chr1:151933600-151945000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:151934000-151940600	Weak transcription	Gastric	stomach
4	chr1:151934200-151940600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:151934200-151942600	Weak transcription	HSMM	muscle
6	chr1:151934400-151940200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:151934600-151940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:151934600-151953400	Weak transcription	Psoas Muscle	Psoas
9	chr1:151934800-151939600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:151934800-151940200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:151935200-151940400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:151935800-151937400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:151936000-151945000	Weak transcription	HSMMtube	muscle
14	chr1:151936400-151938800	Weak transcription	Hela-S3	cervix
15	chr1:151936800-151937400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:151936800-151937800	Enhancers	NHEK	skin
17	chr1:151937000-151937400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:151937000-151937400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:151937000-151937400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:151937000-151937400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:151937000-151937400	Enhancers	Stomach Mucosa	stomach
22	chr1:151937200-151937400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr1:151937200-151938800	Weak transcription	HUVEC	blood vessel
24	chr1:151937200-151940200	Weak transcription	Adipose Nuclei	Adipose
25	chr1:151937200-151940200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:151937200-151940400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:151937200-151940400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:151937200-151940600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:151937200-151940600	Weak transcription	Left Ventricle	heart
30	chr1:151937200-151940600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:151937200-151940800	Weak transcription	Spleen	Spleen
32	chr1:151937200-151945000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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