Variant report

Variant	rs113510149
Chromosome Location	chr3:136240492-136240493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv877519	chr3:136035737-136279390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv877520	chr3:136056861-136310985	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv877521	chr3:136069286-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv877522	chr3:136088038-136241028	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv877523	chr3:136088038-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520012	chr3:136088038-136314119	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv877524	chr3:136112109-136295283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv877525	chr3:136112109-136310985	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv877526	chr3:136149139-136310985	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv877527	chr3:136182053-136310985	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv877528	chr3:136209550-136295283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv591850	chr3:136209550-136300732	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	esv3327611	chr3:136239955-136240665	Weak transcription Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136176400-136314200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:136176600-136260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:136176800-136266200	Weak transcription	Hela-S3	cervix
4	chr3:136191400-136268000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:136192400-136252400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:136195400-136241800	Weak transcription	NH-A	brain
7	chr3:136195400-136250400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:136195400-136278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:136212200-136323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:136212400-136241600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:136212400-136249600	Weak transcription	Lung	lung
12	chr3:136212600-136248200	Weak transcription	Esophagus	oesophagus
13	chr3:136213000-136251000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:136213000-136252200	Weak transcription	Left Ventricle	heart
15	chr3:136213000-136326600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:136213200-136246000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:136213200-136246600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:136214000-136246200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:136215600-136246200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:136220600-136242800	Weak transcription	GM12878-XiMat	blood
21	chr3:136220600-136266200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:136221000-136246400	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:136221200-136241200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:136221200-136251000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:136221400-136246400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:136221400-136251000	Weak transcription	Liver	Liver
27	chr3:136221600-136246200	Weak transcription	Fetal Intestine Large	intestine
28	chr3:136221600-136251000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:136222000-136246200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:136222000-136246600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr3:136222200-136251000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:136222200-136251200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:136222400-136266200	Weak transcription	HSMM	muscle
34	chr3:136227800-136246600	Weak transcription	Fetal Thymus	thymus
35	chr3:136227800-136246600	Weak transcription	Thymus	Thymus
36	chr3:136230000-136246400	Weak transcription	Fetal Stomach	stomach
37	chr3:136230400-136251000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr3:136230600-136247600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:136230800-136246200	Weak transcription	Fetal Lung	lung
40	chr3:136232000-136241800	Weak transcription	Osteobl	bone
41	chr3:136232000-136263600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:136232200-136246600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:136232200-136247000	Weak transcription	Aorta	Aorta
44	chr3:136232400-136251000	Weak transcription	Adipose Nuclei	Adipose
45	chr3:136232400-136255200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:136232600-136251000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:136232800-136250800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:136233000-136241000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:136233200-136241200	Weak transcription	NHDF-Ad	bronchial
50	chr3:136233800-136247200	Weak transcription	Colonic Mucosa	Colon

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