Variant report

Variant	rs113625924
Chromosome Location	chr6:35136596-35136597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35134997..35137568-chr6:35225872..35228081,2	MCF-7	breast:
2	chr6:35131417..35136766-chr6:35169545..35174762,6	MCF-7	breast:
3	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
4	chr6:35136063..35139125-chr6:35139498..35141793,3	K562	blood:
5	chr6:35126225..35131731-chr6:35132022..35136988,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340708	chr6:35135274-35139572	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35128600-35137400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35128800-35137400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:35130600-35141400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:35131000-35137400	Weak transcription	Lung	lung
5	chr6:35134000-35137400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:35134200-35136600	Weak transcription	Fetal Stomach	stomach
7	chr6:35134200-35137400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:35134200-35137400	Weak transcription	NH-A	brain
9	chr6:35134400-35137200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:35134400-35137400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:35134400-35137400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:35134400-35137400	Weak transcription	Osteobl	bone
13	chr6:35134400-35137600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:35134400-35140400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:35134600-35136600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:35134600-35136600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:35134600-35137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:35134600-35137400	Weak transcription	NHDF-Ad	bronchial
19	chr6:35134600-35137800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:35134800-35137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:35134800-35137400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:35135000-35137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:35135000-35137400	Weak transcription	Gastric	stomach
24	chr6:35135000-35148800	Weak transcription	Esophagus	oesophagus
25	chr6:35135600-35138600	Weak transcription	Stomach Mucosa	stomach
26	chr6:35135800-35137000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:35136000-35136600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:35136000-35136800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr6:35136000-35137000	Enhancers	Fetal Heart	heart
30	chr6:35136000-35137000	Enhancers	Fetal Kidney	kidney
31	chr6:35136000-35137000	Enhancers	Fetal Lung	lung
32	chr6:35136200-35136800	Enhancers	Ovary	ovary
33	chr6:35136200-35137000	Enhancers	Left Ventricle	heart
34	chr6:35136400-35137000	Enhancers	Fetal Thymus	thymus

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