Variant report

Variant	rs113631128
Chromosome Location	chr4:69138246-69138247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69137297..69138672-chr4:69241345..69242423,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162840	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1812438	chr4:68943858-69154222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1806586	chr4:68943858-69592846	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv461546	chr4:69049643-69223057	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv594506	chr4:69049643-69223057	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv964740	chr4:69137797-69159003	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69137000-69138400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:69137400-69138800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:69137800-69138400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:69137800-69138400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:69137800-69138400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:69137800-69138400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:69137800-69138400	Active TSS	NHDF-Ad	bronchial
8	chr4:69137800-69138400	Active TSS	NHLF	lung
9	chr4:69137800-69138600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr4:69137800-69138600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr4:69137800-69138800	Enhancers	HepG2	liver
12	chr4:69137800-69139000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr4:69137800-69139000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:69137800-69139200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr4:69138000-69138400	Enhancers	Primary B cells from peripheral blood	blood
16	chr4:69138000-69138400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:69138000-69138600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr4:69138000-69139800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:69138000-69140400	Enhancers	Fetal Intestine Small	intestine
20	chr4:69138200-69138400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:69138200-69138400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
22	chr4:69138200-69138400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:69138200-69138400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:69138200-69138400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:69138200-69138400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:69138200-69138400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:69138200-69138400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr4:69138200-69138400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr4:69138200-69138400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:69138200-69138400	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr4:69138200-69138400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr4:69138200-69138400	Flanking Active TSS	Fetal Kidney	kidney
33	chr4:69138200-69138400	Flanking Active TSS	HMEC	breast
34	chr4:69138200-69138400	Flanking Active TSS	HSMMtube	muscle
35	chr4:69138200-69138400	Flanking Active TSS	NH-A	brain
36	chr4:69138200-69138600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr4:69138200-69138600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:69138200-69138600	Flanking Active TSS	Osteobl	bone
39	chr4:69138200-69138800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:69138200-69138800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr4:69138200-69138800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:69138200-69138800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr4:69138200-69138800	Enhancers	GM12878-XiMat	blood
44	chr4:69138200-69139000	Enhancers	NHEK	skin
45	chr4:69138200-69139400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:69138200-69139400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr4:69138200-69139400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:69138200-69139400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:69138200-69139600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:69138200-69139600	Enhancers	HSMM	muscle

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