Variant report
| Variant | rs113640929 |
|---|---|
| Chromosome Location | chr1:223619148-223619149 |
| allele | -/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:223305854..223308381-chr1:223616232..223619219,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000187554 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832670 | chr1:223561771-223683381 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv873208 | chr1:223603809-223639469 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv999167 | chr1:223607886-223643710 | ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv818822 | chr1:223614738-223632045 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv518381 | chr1:223618767-223645256 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv549239 | chr1:223618767-223645256 | ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
