Variant report

Variant	rs113785505
Chromosome Location	chr3:98556810-98556811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:20354331..20356864-chr3:98555209..98558194,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1009032	chr3:98514221-98607721	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	esv3325835	chr3:98556087-98558635	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98503400-98576400	Weak transcription	Gastric	stomach
2	chr3:98528200-98575400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:98528600-98562000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:98536200-98594200	Weak transcription	HepG2	liver
5	chr3:98537000-98567000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:98537000-98592800	Weak transcription	K562	blood
7	chr3:98538200-98569200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:98541200-98567000	Weak transcription	Liver	Liver
9	chr3:98541400-98565000	Weak transcription	HUVEC	blood vessel
10	chr3:98545400-98561600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:98548800-98566600	Weak transcription	Adipose Nuclei	Adipose
12	chr3:98550200-98568600	Weak transcription	Thymus	Thymus
13	chr3:98550800-98561800	Weak transcription	HSMMtube	muscle
14	chr3:98551000-98557800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:98551600-98562000	Weak transcription	Fetal Heart	heart
16	chr3:98552600-98566600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:98552600-98567000	Weak transcription	Fetal Kidney	kidney
18	chr3:98552800-98558000	Weak transcription	NH-A	brain
19	chr3:98552800-98558200	Weak transcription	A549	lung
20	chr3:98552800-98561400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:98552800-98566600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:98552800-98575800	Weak transcription	Pancreas	Pancrea
23	chr3:98552800-98578000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:98552800-98579800	Weak transcription	Right Ventricle	heart
25	chr3:98553000-98557800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:98553000-98557800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr3:98553000-98557800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:98553000-98557800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:98553000-98557800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:98553000-98558200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:98553000-98558200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:98553000-98558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:98553000-98558200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:98553000-98558200	Weak transcription	HSMM	muscle
35	chr3:98553000-98558200	Weak transcription	NHDF-Ad	bronchial
36	chr3:98553000-98558200	Weak transcription	Osteobl	bone
37	chr3:98553000-98558400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:98553000-98558600	Weak transcription	NHEK	skin
39	chr3:98553000-98558800	Weak transcription	HMEC	breast
40	chr3:98553000-98559200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:98553000-98559400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:98553000-98559400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:98553000-98561400	Weak transcription	Fetal Lung	lung
44	chr3:98553000-98562400	Weak transcription	NHLF	lung
45	chr3:98553000-98563200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:98553000-98565800	Weak transcription	Ovary	ovary
47	chr3:98553000-98566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:98553000-98566800	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:98553000-98567000	Weak transcription	Brain Germinal Matrix	brain
50	chr3:98553000-98575600	Weak transcription	Fetal Stomach	stomach

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