Variant report

Variant	rs113800651
Chromosome Location	chr15:30110771-30110772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:30110373..30112075-chr15:30112692..30115321,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104067	Chromatin interaction
ENSG00000259523	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv903754	chr15:30023454-30382120	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv903755	chr15:30036085-30351434	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	esv1851951	chr15:30043659-30178871	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	esv1845759	chr15:30097078-30142373	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv827275	chr15:30110266-30115636	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:30082400-30113600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:30092600-30111400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:30098000-30111600	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:30098000-30112400	Weak transcription	Fetal Stomach	stomach
5	chr15:30098400-30111600	Weak transcription	HSMMtube	muscle
6	chr15:30105200-30111800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:30105600-30112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:30106200-30112000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:30106200-30112200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:30106400-30111600	Weak transcription	HSMM	muscle
11	chr15:30106800-30112200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:30107200-30112600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:30108000-30111600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:30108000-30111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:30108000-30111600	Weak transcription	Hela-S3	cervix
16	chr15:30108200-30111400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr15:30108200-30111400	Weak transcription	NHLF	lung
18	chr15:30108200-30111600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:30108200-30111800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:30108200-30111800	Weak transcription	HMEC	breast
21	chr15:30108200-30112000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:30108200-30112000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:30108200-30113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:30108400-30111000	Weak transcription	Brain Substantia Nigra	brain
25	chr15:30108400-30111400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:30108400-30111600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:30108400-30111600	Weak transcription	Adipose Nuclei	Adipose
28	chr15:30108400-30111600	Weak transcription	Osteobl	bone
29	chr15:30108400-30111800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:30108400-30111800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:30108400-30111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:30108400-30111800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:30108400-30112200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:30108400-30112400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:30108400-30112800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:30108400-30113000	Weak transcription	Esophagus	oesophagus
37	chr15:30108600-30110800	Weak transcription	Left Ventricle	heart
38	chr15:30108600-30111000	Weak transcription	Lung	lung
39	chr15:30108600-30111200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:30108600-30111600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:30108600-30111600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:30108600-30111600	Weak transcription	Psoas Muscle	Psoas
43	chr15:30108600-30111600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:30108600-30111800	Weak transcription	Aorta	Aorta
45	chr15:30108600-30111800	Weak transcription	Fetal Intestine Small	intestine
46	chr15:30108600-30112000	Weak transcription	Placenta	Placenta
47	chr15:30108600-30112200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:30108600-30112200	Weak transcription	Ovary	ovary
49	chr15:30108600-30112400	Weak transcription	Fetal Intestine Large	intestine
50	chr15:30108600-30112400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links