Variant report

Variant	rs11385
Chromosome Location	chr11:65486598-65486599
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65484089..65489445-chr11:65545173..65550834,9	K562	blood:
2	chr11:65485229..65488136-chr11:65767888..65770369,2	MCF-7	breast:
3	chr11:65428776..65430910-chr11:65484370..65486909,4	MCF-7	breast:
4	chr11:65485004..65489716-chr11:65621545..65626984,9	K562	blood:
5	chr11:65486463..65488167-chr11:65819267..65821152,2	K562	blood:
6	chr11:65462860..65464502-chr11:65486006..65488122,2	MCF-7	breast:
7	chr11:65482499..65489390-chr11:65622947..65628870,15	MCF-7	breast:
8	chr11:65485991..65487917-chr11:65633915..65636127,2	MCF-7	breast:
9	chr11:65484089..65489642-chr11:65545405..65550834,8	K562	blood:
10	chr11:65485320..65488202-chr11:65635523..65638035,2	K562	blood:
11	chr11:65477884..65488010-chr11:65623516..65630419,28	MCF-7	breast:
12	chr11:65486247..65489385-chr11:65493532..65496912,4	MCF-7	breast:
13	chr11:65485409..65487052-chr14:45365480..45368085,2	MCF-7	breast:
14	chr11:65485735..65490975-chr11:65621882..65626984,8	K562	blood:
15	chr11:65144119..65146511-chr11:65485496..65488030,2	K562	blood:
16	chr11:65485673..65489789-chr11:65654054..65658887,6	K562	blood:
17	chr11:65485320..65487599-chr11:65635523..65637223,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179476	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000254470	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000258633	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000239356	Chromatin interaction
ENSG00000214659	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000175827	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000172638	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000175334	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11545201	1.00[CHD][hapmap]
rs11545202	1.00[CHD][hapmap]
rs11548537	1.00[CHD][hapmap]
rs12271652	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65480000-65487400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:65480600-65486600	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:65480600-65486800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:65480600-65486800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:65480800-65486600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:65480800-65486600	Strong transcription	A549	lung
7	chr11:65480800-65486800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr11:65480800-65486800	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr11:65480800-65486800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:65480800-65486800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:65480800-65486800	Strong transcription	Aorta	Aorta
12	chr11:65480800-65487000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:65481000-65486600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:65481000-65487000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:65484000-65487000	Weak transcription	Fetal Kidney	kidney
16	chr11:65485000-65486800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:65485000-65486800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:65485000-65487000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
19	chr11:65485200-65486600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:65485200-65486600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:65485400-65486600	Transcr. at gene 5' and 3'	Hela-S3	cervix
22	chr11:65485400-65486800	Weak transcription	Psoas Muscle	Psoas
23	chr11:65485400-65487000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:65485400-65487000	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr11:65485400-65487200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:65485400-65487200	Genic enhancers	Spleen	Spleen
27	chr11:65485400-65487600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:65485400-65487800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:65485400-65488000	Transcr. at gene 5' and 3'	Dnd41	blood
30	chr11:65485600-65486600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:65485600-65486600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:65485600-65486800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:65485600-65487000	Genic enhancers	Primary hematopoietic stem cells	blood
34	chr11:65485600-65487000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:65485600-65487000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:65485600-65487000	Genic enhancers	Rectal Mucosa Donor 31	rectum
37	chr11:65485600-65487200	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr11:65485600-65487200	Genic enhancers	Liver	Liver
39	chr11:65485600-65487200	Genic enhancers	Placenta Amnion	Placenta Amnion
40	chr11:65485600-65487600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:65485800-65486600	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr11:65485800-65486800	Genic enhancers	Fetal Muscle Leg	muscle
43	chr11:65485800-65486800	Genic enhancers	Fetal Thymus	thymus
44	chr11:65485800-65486800	Genic enhancers	Right Ventricle	heart
45	chr11:65485800-65486800	Genic enhancers	NHDF-Ad	bronchial
46	chr11:65485800-65487000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:65485800-65487000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:65485800-65487000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:65485800-65487000	Genic enhancers	Adipose Nuclei	Adipose
50	chr11:65485800-65487000	Genic enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links