Variant report

Variant	rs113879319
Chromosome Location	chr13:87780840-87780841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87776715..87778744-chr13:87780725..87783361,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3336463	chr13:87780728-87780904	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87770400-87781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87777000-87782000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:87777200-87781600	Weak transcription	Hela-S3	cervix
4	chr13:87777200-87781800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:87777200-87782000	Weak transcription	NH-A	brain
6	chr13:87777200-87782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:87777200-87784000	Weak transcription	HSMMtube	muscle
8	chr13:87777400-87782000	Weak transcription	HMEC	breast
9	chr13:87780000-87781000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:87780200-87781000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:87780200-87781000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:87780200-87781000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:87780200-87781000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:87780200-87781200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:87780200-87781200	Enhancers	Fetal Heart	heart
16	chr13:87780200-87782200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:87780200-87784600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:87780400-87781200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:87780400-87782400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:87780600-87781000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:87780800-87781200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:87780800-87782400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:87780800-87783000	Enhancers	Brain Germinal Matrix	brain

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