Variant report

Variant	rs114061873
Chromosome Location	chr6:27177929-27177930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv970092	chr6:27177750-27181734	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27174000-27179600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:27174400-27179000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:27174400-27181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27176400-27178000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:27176800-27178000	Enhancers	GM12878-XiMat	blood
6	chr6:27177000-27181000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:27177200-27178000	Flanking Active TSS	K562	blood
8	chr6:27177200-27181200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:27177200-27181400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:27177400-27178000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:27177400-27178200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:27177600-27178000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:27177600-27178000	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:27177800-27178000	Flanking Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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