Variant report

Variant	rs114079653
Chromosome Location	chr9:85679698-85679699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:85679694-85679744	HRPEpiC	eye:	n/a
2	chr9:85679694-85679744	HUVEC	blood vessel:	n/a
3	chr9:85679694-85679744	AG04449	skin:	fetal
4	chr9:85679694-85679744	BJ	skin:	n/a
5	chr9:85679694-85679744	Hela-S3	cervix:	n/a
6	chr9:85679694-85679744	NT2-D1	testis:	n/a
7	chr9:85679694-85679744	ProgFib	skin:	n/a
8	chr9:85679694-85679744	ovcar-3	ovarian:	n/a
9	chr9:85679694-85679744	SAEC	small airway:	n/a
10	chr9:85679694-85679744	AoSMC	blood vessel:	n/a
11	chr9:85679694-85679744	IMR90	lung:	fetal
12	chr9:85679694-85679744	AG09309	skin:	n/a
13	chr9:85679694-85679744	Jurkat	blood:	n/a
14	chr9:85679694-85679744	HIPEpiC	eye:	n/a
15	chr9:85679694-85679744	AG10803	skin:	n/a
16	chr9:85679694-85679744	HEK293	kidney:	embryo
17	chr9:85679694-85679744	PANC-1	pancreas:	n/a
18	chr9:85679694-85679744	HRCEpiC	kidney:	n/a
19	chr9:85679694-85679744	MCF-7	breast:	n/a
20	chr9:85679694-85679744	PrEC	prostate:	n/a
21	chr9:85679694-85679744	GM12878	blood:	n/a
22	chr9:85679694-85679744	SK-N-SH_RA	brain:	n/a
23	chr9:85679694-85679744	T-47D	breast:	n/a
24	chr9:85679694-85679744	PFSK-1	brain:	n/a
25	chr9:85679694-85679744	AG04450	lung:	fetal
26	chr9:85679694-85679744	HL-60	blood:	n/a
27	chr9:85679694-85679744	GM12891	blood:	n/a
28	chr9:85679694-85679744	HNPCEpiC	eye:	n/a
29	chr9:85679694-85679744	SK-N-SH	brain:	n/a
30	chr9:85679694-85679744	A549	lung:	n/a
31	chr9:85679694-85679744	HPAEpiC	pulmonary alveolar:	n/a
32	chr9:85679694-85679744	GM06990	blood:	n/a
33	chr9:85679694-85679744	AG09319	gingival:	n/a
34	chr9:85679694-85679744	K562	blood:	n/a
35	chr9:85679694-85679744	RPTEC	kidney:	n/a
36	chr9:85679694-85679744	H1-hESC	embryonic stem cell:	embryo
37	chr9:85679694-85679744	HEEpiC	esophagus:	n/a
38	chr9:85679694-85679744	HCT-116	colon:	n/a
39	chr9:85679694-85679744	U87	brain:	n/a
40	chr9:85679694-85679744	NB4	blood:	n/a
41	chr9:85679694-85679744	HCF	heart:	n/a
42	chr9:85679694-85679744	HepG2	liver:	n/a
43	chr9:85679694-85679744	HCPEpiC	choroid plexus:	n/a
44	chr9:85679694-85679744	BE2_C	brain:	n/a
45	chr9:85679694-85679744	CMK	blood:	n/a
46	chr9:85679694-85679744	SK-N-MC	brain:	n/a
47	chr9:85679694-85679744	LNCaP	prostate:	n/a
48	chr9:85679694-85679744	NHBE	bronchial:	n/a
49	chr9:85679694-85679744	SKMC	muscle:	n/a
50	chr9:85679694-85679744	GM19239	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85679555..85682048-chr9:85742285..85744042,2	MCF-7	breast:

No data

Variant related genes	Relation type
RASEF	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831643	chr9:85679431-85798990	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85674400-85679800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr9:85678600-85681400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:85678800-85681600	Weak transcription	HMEC	breast
4	chr9:85679000-85680600	Weak transcription	Stomach Mucosa	stomach
5	chr9:85679200-85687800	Weak transcription	Fetal Intestine Small	intestine
6	chr9:85679400-85681200	Weak transcription	A549	lung
7	chr9:85679400-85684200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:85679600-85679800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr9:85679600-85680400	Enhancers	Pancreas	Pancrea

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