Variant report

Variant	rs114101410
Chromosome Location	chr6:28076478-28076479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28075060..28076824-chr6:28104395..28106561,2	K562	blood:
2	chr6:28071334..28077239-chr6:28089535..28095129,7	MCF-7	breast:
3	chr6:28072263..28073986-chr6:28075857..28078538,2	MCF-7	breast:
4	chr6:28074765..28079544-chr6:28088308..28092763,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261839	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000269293	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv349384	chr6:28075886-28080766	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28073000-28083800	Weak transcription	Aorta	Aorta
2	chr6:28073200-28081600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:28073200-28081600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:28073200-28082200	Weak transcription	HSMM	muscle
5	chr6:28073200-28082400	Weak transcription	Fetal Stomach	stomach
6	chr6:28073200-28083000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:28073200-28083400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:28073200-28091400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:28073200-28091800	Weak transcription	Right Ventricle	heart
10	chr6:28073400-28080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:28073400-28081200	Weak transcription	Adipose Nuclei	Adipose
12	chr6:28073400-28081600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:28073400-28081600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:28073400-28081600	Weak transcription	HSMMtube	muscle
15	chr6:28073400-28081600	Weak transcription	NH-A	brain
16	chr6:28073400-28081800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:28073400-28082000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:28073400-28082000	Weak transcription	Fetal Thymus	thymus
19	chr6:28073400-28082200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:28073400-28082200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:28073400-28082200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:28073400-28082200	Weak transcription	GM12878-XiMat	blood
23	chr6:28073400-28082400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:28073400-28082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:28073400-28082400	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:28073400-28082400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:28073400-28082600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:28073400-28082600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:28073400-28082600	Weak transcription	Placenta	Placenta
30	chr6:28073400-28082800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:28073400-28082800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:28073400-28083000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:28073400-28083000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:28073400-28083000	Weak transcription	Fetal Lung	lung
35	chr6:28073400-28083000	Weak transcription	Thymus	Thymus
36	chr6:28073400-28083000	Weak transcription	Spleen	Spleen
37	chr6:28073400-28083200	Weak transcription	Brain Angular Gyrus	brain
38	chr6:28073400-28083400	Weak transcription	A549	lung
39	chr6:28073400-28083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:28073400-28083600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:28073400-28083600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:28073400-28083600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:28073400-28083600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:28073400-28083600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:28073400-28083600	Weak transcription	Fetal Kidney	kidney
46	chr6:28073400-28083800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:28073400-28083800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:28073400-28088000	Weak transcription	NHLF	lung
49	chr6:28073400-28091200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:28073400-28091400	Weak transcription	NHDF-Ad	bronchial

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